LOCUS       XM_036157561            3709 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NOVA alternative splicing regulator 1
            (Nova1), transcript variant X1, mRNA.
ACCESSION   XM_036157561
VERSION     XM_036157561.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3709
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..3709
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /note="NOVA alternative splicing regulator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 3 ESTs, 1613 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
     CDS             46..1638
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /codon_start=1
                     /product="RNA-binding protein Nova-1 isoform X1"
                     /protein_id="XP_036013454.1"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
                     /translation="MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNT
                     GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI
                     QGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKS
                     SPSDPMTTSRANQVQYHPLIYTILSQRLCQLEKQILVKIIVPNSTAGLIIGKGGATVK
                     AIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNI
                     SYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGND
                     LVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEA
                     SASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSKDVVEIA
                     VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQ
                     YLITQRITYEQGVRAANPQKVG"
ORIGIN      
        1 caaaagggag ccgcttctcc cggtgcagcg gcaggaactg caagcatgat ggcggcagct
       61 cccattcagc agaacgggac ccatacgggg gttcccatag atctggaccc gccggactcg
      121 cggaaaaggc cgcttgaagc gccccctgaa gccggcagca ccaagaggac caacacgggc
      181 gaagacggcc agtactttct aaaggttctc atacctagtt atgctgctgg atctataatt
      241 gggaagggag gacagacaat tgttcagttg caaaaagaaa ctggagccac tatcaagctg
      301 tctaaatcca aagattttta tccaggtact actgagaggg tttgcttgat ccagggaaca
      361 attgaagcgc tgaacgcagt tcatggattc attgcagaaa aaatccgaga aatgccccaa
      421 aatgttgcca agacagaacc agtcagtatc ctacaacctc agaccaccgt taatcctgat
      481 cgcatcaaac aaacattgcc atcttcccca actaccacca agtcctctcc atctgacccc
      541 atgaccacct ccagagccaa tcaggtacag tatcatcctc tcatctacac catactttca
      601 cagcggttgt gccaactgga gaaacagata ctggtaaaga ttatagttcc caacagcaca
      661 gcaggtctga taatagggaa gggaggtgct actgtgaagg ctataatgga gcagtcaggg
      721 gcttgggtgc agctttccca gaaacccgat gggatcaact tgcaagagag ggttgtcact
      781 gtgagtggag aacctgaaca aaaccgaaaa gctgttgaac ttatcatcca gaagatacaa
      841 gaggatccac agagtggcag ctgtctcaat atcagttatg ccaatgtgac aggtccagtg
      901 gcaaattcca atccaaccgg atctccttat gcaaacactg ctgaagtgtt accaactgcc
      961 gcagcagccg cagggctatt aggacatgct aaccttgctg gcgttgcggc ctttccagca
     1021 gttttatctg gcttcacagg caatgacctg gtggccatca cctctgcact taatacatta
     1081 gccagctatg gatataatct caacacatta ggtttaggtc tcagccaagc agcagcaacg
     1141 ggggctttgg ctgccgcagc tgccagtgcc aacccagcag cagcagcagc caatttgttg
     1201 gccacctatg ccagtgaagc ctcagccagc ggcagcacgg ctggtggaac ggcggggaca
     1261 tttgcattag gtagcctggc tgctgctact gctgcaacca atggatactt tggagctgcc
     1321 tcgcccctag ctgccagtgc cattctaggg acagagaaat ccacagatgg atcaaaggat
     1381 gtagttgaaa tagcagttcc agaaaactta gttggtgcaa tacttggcaa aggagggaaa
     1441 accttagtgg aataccagga gttgactggt gcaaggatac agatctccaa aaagggagaa
     1501 ttcgtacctg gcacaaggaa tcggaaggta accattactg gaacaccagc tgcaacacag
     1561 gctgctcagt atttaattac acagaggatc acatatgagc aaggagttcg ggctgccaat
     1621 cctcagaaag tgggttgagt gtccccatta tacgtcagag tgttttaacc cctcctttgc
     1681 cccatttgga agaaggatgt actgtacttt gcagaagtga agtttttctg ttattaatat
     1741 ataattatgc aaatgaatgc gactatgttg acaatgtgta tatgtaaata atatgtgttt
     1801 taccagatgt ttcatagaat tttttcttga tctgttttgt tctctatact ttgcttgtgt
     1861 atatttgtca gaggtgtttc tagtgtaaga tttaagcctg ccattttacc agcattattg
     1921 tagtttaatg attgaatgta gacagggata tgcgtatagt tttcagtatt agttctagat
     1981 aacactaaat taactactgt taggttgagt atggtggggt cagtgaccta aactggagtg
     2041 aggccaaagc actgtcatgt atgtcttact tcctgcttag ggcacagaga agtaggaaac
     2101 aatattttga aaaataagtt ttcaatttaa aatgatcaaa aagcaatata gttgcataaa
     2161 agcactgtaa aatatttaaa aggttaaaac tgtggaaaat tacattggta agtttacaga
     2221 tcaataaaag cacctgttct ccatctgaac tagacaatgg aaataatgct gcatgctggc
     2281 cagggcccat tcttcatcat ttgtaagttc aacaaaagtt ctcacatgga gtcccacctc
     2341 ttccgaggtt tgtacatttg tttttaagca ctgaattcac tactgatccc atcgcctggc
     2401 cagtagaaca gtcattactc catgaacatc ctcactgttt agacacataa ctgtggtaca
     2461 gtgtattgga aattttataa acaaaagtga aagtgccaac acattattga tagctgataa
     2521 tgtttcatta tctgcaactg ctggataagt atgttgcatt ttaagagctt ataattgtgt
     2581 ataatttgtt aacactagca acctattagt attgtgaatg tagagtttac tgtgaagcta
     2641 tctgtgactt agctgtctgc tccatgacgg agttcttgca gcatggcgct agcagccagt
     2701 gcagtttcta atactcggta atttgcatgt tttgtggagc atttttatgt caccaaccag
     2761 acagtatttc ctgcatgctt atttagaaga ggcagtttat cttgagaggt agtgtgatct
     2821 acctttgtca ggctttttga caggtcattt cagagtaagc ctttgttccc aagacccaac
     2881 aactgtcacc ctcttctgta cctctcctga gtgccaactg tccaggccat ttgacacacc
     2941 atctgttaac ctctgagttt gcccactcaa ggccactcat aggggcatcc atccccagca
     3001 cctcctcatg ctgtgcatgc agtcttaaat tcaatggaca aaactaaaat gctggctacc
     3061 tctggatcat ctggctgagc aactgaatta caaaagagaa ttacttccat ctcaacttca
     3121 gcccattggt tacgtccatc ctagcaagct aaatggcatc ccagctgctc ctttctgtgc
     3181 aaccaattaa agaacaatga gtgtgatgct ccatgtctga atttcgtcca gcctctctct
     3241 gaactgtgat ctttgtcctc atgaactttc ccttttgttc attgaactat atggactctt
     3301 catttcatat tgatttactg tgcaatttac ttttggacat tgagaacttg aaattatttc
     3361 ctgatccctt ccccttccac tattaataat tcatttctgt caaactgtaa gagtaggact
     3421 catttttttt tttttttagt ttttaacatt ggactgttat ttcatttaga gttctctatc
     3481 tctaaatatt tatttagaga atgattttca aagggaatga tatgcttgtt taaatgaaag
     3541 agaaaagctg tagtaaactg tgttaattgg taatgactat ttatcgtcga tactctgtag
     3601 ctgtgtaagt tttgacaaat agtgtatctc gtggaatcag tggttagcat tgccgctatt
     3661 atatttactc attttatcat tataaatgtg cttagttcat catgtagca
//
