LOCUS       XM_030246862            3752 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NOVA alternative splicing regulator 1
            (Nova1), transcript variant X18, mRNA.
ACCESSION   XM_030246862
VERSION     XM_030246862.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246862.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..3752
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /note="NOVA alternative splicing regulator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 3 ESTs, 1151 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
     CDS             521..1678
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /codon_start=1
                     /product="RNA-binding protein Nova-1 isoform X9"
                     /protein_id="XP_030102722.1"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
                     /translation="MPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPM
                     TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVS
                     GEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTA
                     AAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAA
                     ATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGY
                     FGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQ
                     ISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG"
ORIGIN      
        1 gtctcatcaa gatggcgacc cggggttctg agccgacccg ctcgccccag ccggtgctgg
       61 ccccggcgac agggtccgct cccagggccg ccccccgcga gaggtgatgg ccgcctgaag
      121 atgcgcgctg catttaacag tctgatcaaa taaataaata aatggcactt gggtagcggc
      181 ttgcagatgc tgggggcacc ggagactttt gcctctgttc atccccttgc tctgggccac
      241 aagtagtatg caaaatcttg atgagtgcat gccctgagcg cacttacatg aagacggcca
      301 gtactttcta aaggttctca tacctagtta tgctgctgga tctataattg ggaagggagg
      361 acagacaatt gttcagttgc aaaaagaaac tggagccact atcaagctgt ctaaatccaa
      421 agatttttat ccaggtacta ctgagagggt ttgcttgatc cagggaacaa ttgaagcgct
      481 gaacgcagtt catggattca ttgcagaaaa aatccgagaa atgccccaaa atgttgccaa
      541 gacagaacca gtcagtatcc tacaacctca gaccaccgtt aatcctgatc gcatcaaaca
      601 aacattgcca tcttccccaa ctaccaccaa gtcctctcca tctgacccca tgaccacctc
      661 cagagccaat caggtaaaga ttatagttcc caacagcaca gcaggtctga taatagggaa
      721 gggaggtgct actgtgaagg ctataatgga gcagtcaggg gcttgggtgc agctttccca
      781 gaaacccgat gggatcaact tgcaagagag ggttgtcact gtgagtggag aacctgaaca
      841 aaaccgaaaa gctgttgaac ttatcatcca gaagatacaa gaggatccac agagtggcag
      901 ctgtctcaat atcagttatg ccaatgtgac aggtccagtg gcaaattcca atccaaccgg
      961 atctccttat gcaaacactg ctgaagtgtt accaactgcc gcagcagccg cagggctatt
     1021 aggacatgct aaccttgctg gcgttgcggc ctttccagca gttttatctg gcttcacagg
     1081 caatgacctg gtggccatca cctctgcact taatacatta gccagctatg gatataatct
     1141 caacacatta ggtttaggtc tcagccaagc agcagcaacg ggggctttgg ctgccgcagc
     1201 tgccagtgcc aacccagcag cagcagcagc caatttgttg gccacctatg ccagtgaagc
     1261 ctcagccagc ggcagcacgg ctggtggaac ggcggggaca tttgcattag gtagcctggc
     1321 tgctgctact gctgcaacca atggatactt tggagctgcc tcgcccctag ctgccagtgc
     1381 cattctaggg acagagaaat ccacagatgg atcaaaggat gtagttgaaa tagcagttcc
     1441 agaaaactta gttggtgcaa tacttggcaa aggagggaaa accttagtgg aataccagga
     1501 gttgactggt gcaaggatac agatctccaa aaagggagaa ttcgtacctg gcacaaggaa
     1561 tcggaaggta accattactg gaacaccagc tgcaacacag gctgctcagt atttaattac
     1621 acagaggatc acatatgagc aaggagttcg ggctgccaat cctcagaaag tgggttgagt
     1681 gtccccatta tacgtcagag tgttttaacc cctcctttgc cccatttgga agaaggatgt
     1741 actgtacttt gcagaagtga agtttttctg ttattaatat ataattatgc aaatgaatgc
     1801 gactatgttg acaatgtgta tatgtaaata atatgtgttt taccagatgt ttcatagaat
     1861 tttttcttga tctgttttgt tctctatact ttgcttgtgt atatttgtca gaggtgtttc
     1921 tagtgtaaga tttaagcctg ccattttacc agcattattg tagtttaatg attgaatgta
     1981 gacagggata tgcgtatagt tttcagtatt agttctagat aacactaaat taactactgt
     2041 taggttgagt atggtggggt cagtgaccta aactggagtg aggccaaagc actgtcatgt
     2101 atgtcttact tcctgcttag ggcacagaga agtaggaaac aatattttga aaaataagtt
     2161 ttcaatttaa aatgatcaaa aagcaatata gttgcataaa agcactgtaa aatatttaaa
     2221 aggttaaaac tgtggaaaat tacattggta agtttacaga tcaataaaag cacctgttct
     2281 ccatctgaac tagacaatgg aaataatgct gcatgctggc cagggcccat tcttcatcat
     2341 ttgtaagttc aacaaaagtt ctcacatgga gtcccacctc ttccgaggtt tgtacatttg
     2401 tttttaagca ctgaattcac tactgatccc atcgcctggc cagtagaaca gtcattactc
     2461 catgaacatc ctcactgttt agacacataa ctgtggtaca gtgtattgga aattttataa
     2521 acaaaagtga aagtgccaac acattattga tagctgataa tgtttcatta tctgcaactg
     2581 ctggataagt atgttgcatt ttaagagctt ataattgtgt ataatttgtt aacactagca
     2641 acctattagt attgtgaatg tagagtttac tgtgaagcta tctgtgactt agctgtctgc
     2701 tccatgacgg agttcttgca gcatggcgct agcagccagt gcagtttcta atactcggta
     2761 atttgcatgt tttgtggagc atttttatgt caccaaccag acagtatttc ctgcatgctt
     2821 atttagaaga ggcagtttat cttgagaggt agtgtgatct acctttgtca ggctttttga
     2881 caggtcattt cagagtaagc ctttgttccc aagacccaac aactgtcacc ctcttctgta
     2941 cctctcctga gtgccaactg tccaggccat ttgacacacc atctgttaac ctctgagttt
     3001 gcccactcaa ggccactcat aggggcatcc atccccagca cctcctcatg ctgtgcatgc
     3061 agtcttaaat tcaatggaca aaactaaaat gctggctacc tctggatcat ctggctgagc
     3121 aactgaatta caaaagagaa ttacttccat ctcaacttca gcccattggt tacgtccatc
     3181 ctagcaagct aaatggcatc ccagctgctc ctttctgtgc aaccaattaa agaacaatga
     3241 gtgtgatgct ccatgtctga atttcgtcca gcctctctct gaactgtgat ctttgtcctc
     3301 atgaactttc ccttttgttc attgaactat atggactctt catttcatat tgatttactg
     3361 tgcaatttac ttttggacat tgagaacttg aaattatttc ctgatccctt ccccttccac
     3421 tattaataat tcatttctgt caaactgtaa gagtaggact catttttttt tttttttagt
     3481 ttttaacatt ggactgttat ttcatttaga gttctctatc tctaaatatt tatttagaga
     3541 atgattttca aagggaatga tatgcttgtt taaatgaaag agaaaagctg tagtaaactg
     3601 tgttaattgg taatgactat ttatcgtcga tactctgtag ctgtgtaagt tttgacaaat
     3661 agtgtatctc gtggaatcag tggttagcat tgccgctatt atatttactc attttatcat
     3721 tataaatgtg cttagttcat catgtagcat ca
//
