LOCUS       NM_178605               1734 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus NOP16 nucleolar protein (Nop16), mRNA.
ACCESSION   NM_178605
VERSION     NM_178605.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Kundel,D.W., Stromquist,E., Greene,A.L., Zhdankin,O., Regal,R.R.
            and Rose-Hellekant,T.A.
  TITLE     Molecular characterizations of Nop16 in murine mammary tumors with
            varying levels of c-Myc
  JOURNAL   Transgenic Res 21 (2), 393-406 (2012)
   PUBMED   21863248
  REMARK    GeneRIF: Tumor environments with relatively high Myc levels would
            have different coexpression patterns of Nop16 than tumor
            environments with relatively low Myc levels.
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 1734)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC155262.2.
            
            On May 2, 2007 this sequence version replaced NM_178605.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK013251.1, AK088248.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN00849388
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-214               AC155262.2         119480-119693       c
            215-323             AC155262.2         119282-119390       c
            324-393             AC155262.2         118217-118286       c
            394-500             AC155262.2         115439-115545       c
            501-1734            AC155262.2         113810-115043       c
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 28.83 cM"
     gene            1..1734
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /note="NOP16 nucleolar protein"
                     /db_xref="GeneID:28126"
                     /db_xref="MGI:MGI:107862"
     exon            1..214
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /inference="alignment:Splign:2.1.0"
     exon            215..323
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /inference="alignment:Splign:2.1.0"
     exon            324..393
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /inference="alignment:Splign:2.1.0"
     exon            394..500
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /inference="alignment:Splign:2.1.0"
     exon            501..1734
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1066..1071
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /note="hexamer: GATAAA"
     polyA_site      1091
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /note="major polyA site"
     regulatory      1160..1165
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
                     /note="hexamer: ATTAAA"
     polyA_site      1180
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
     polyA_site      1678
                     /gene="Nop16"
                     /gene_synonym="D13Wsu177e"
ORIGIN      
        1 gcgcgcacgg gtggacggag actattaaca cgcggctctg agagcgtggt tcttgagttt
       61 gagctgctgt ttcaagggtt tgagctgctg ttggggcagt tagcgagatg cccaaggcta
      121 agggaaagac tcggaggcag aagttcggtt acaacgtcaa ccgaaagcgt ctgaaccgga
      181 atgctcgtcg gaaggcagcg ccacggattg agtgttccca catacgacat gcctgggacc
      241 acaccaaatc cgtgcggcag aacctggcgg agatggggtt ggccatggac cccaacaagg
      301 cggttcccct ccgtaagaag aaggtaaagg ccatggaggt agacacggag gagcgacccc
      361 gggatcttgt acggaagccc tatgtggtaa atgacctgga ggcagaagcc agcctcccag
      421 agaagaaagg aaataccttg tctcgggacc tcatcgacta tgtgcggtac atggtagaga
      481 atcacgggga ggactacaag gccatggccc gggatgagaa gaattactac caagacaccc
      541 caaaacagat ccggaataag atcaatgtct ataagcgctt ttacccaacg gagtggcaag
      601 ccttcatcga ttctctgcag agtaagaaga tggaggtaga ctgagtgggg cacaccccca
      661 gacctaggtc tgctggaaca acgaaaccaa agccaggctg taaggcaagg ggcgtggagc
      721 atcagtgatg ctggctaagt cctgtggaat cgggtcttac gtgccccctc ccccttcctt
      781 ctggagaagg aactcttcat tttgttttgt tgttttttga gaaagagcat ctctctaata
      841 gccttagctg tcctagaact ctctctgtag accaggttgg tcttgaactc acagagatcc
      901 acctgcctct gcctctcaag tgctgggatt aaaggcgtgc accaccacca cctggagaag
      961 gaactctttc aaggccatgg tttgtgttct gttgggagct tacagaaagc cggggcctgc
     1021 tgtttctttt cagagggatg ctctgtttca gcttgttctg tacatgataa aggaatattt
     1081 tacccatgta acatgactag gtgggttttt gtttgtttgt ttgtttgtga ctgggcttct
     1141 cagtgtagcc ctaggtggga ttaaaggcac acttgtgtaa tatttttgtg tttactgtgc
     1201 ccagctaagc tctggagttg tcccaggaaa agctaatctt actagcgagc ggagatggat
     1261 tatcagctca acagcaagta ctgcagtcct gggcttttgt aggcgctgcc ttgccttctt
     1321 cctcgtcagt gctcctagtc tcggtttcct ccagacactc tccgggaggc ctgggctgac
     1381 atagaagggt aaggagccag gtctctgctc actgtggatt gctttttgtt ggccatggct
     1441 taaatcaaac atcagggacc caaacttgcc atctgggacc ggcagcctgc tcgcactact
     1501 ctaccgtgtg ccactgctag gctttccatg gcatggccat cttctgttgg caggactctt
     1561 gcaagcagtg gcctgagaat gtgataccta ctctgtaaca ggatcacggg caaggggttt
     1621 gagctgggca ttttaaggcc taactaacct caactatgaa tgatgtaaaa acctgcaatt
     1681 gtgtgtattg tatcttcagc gctcttgaaa agcatatttt atacattgcc tatg
//
