LOCUS       NM_133702               3170 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus nucleolar protein 11 (Nol11), transcript variant 1,
            mRNA.
ACCESSION   NM_133702
VERSION     NM_133702.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK076704.1, AK078524.1 and AL596116.14.
            
            On May 8, 2018 this sequence version replaced NM_133702.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078524.1, BC024874.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               AK076704.1         2-112
            112-3158            AK078524.1         3-3049
            3159-3170           AL596116.14        145801-145812       c
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 70.19 cM"
     gene            1..3170
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="nucleolar protein 11"
                     /db_xref="GeneID:68979"
                     /db_xref="MGI:MGI:1916229"
     exon            1..265
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..2296
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="nucleolar protein 11 isoform 1"
                     /protein_id="NP_598463.2"
                     /db_xref="CCDS:CCDS25566.1"
                     /db_xref="GeneID:68979"
                     /db_xref="MGI:MGI:1916229"
                     /translation="MATLEEEFTLSTGVLGAGPEGFLGVEQTDKADQFLVTDSGRTVV
                     LYKVSDQKPLGSWSVKQGQSITCPAVCNFQTGEYIMVHDHKVLRIWNNDDVNVDKVFK
                     ATLSAEVHRIHSVQRTEPLVLFRGGAARGLEALLVEPQQNIESVIPDEEVIVWSEVFM
                     LFKQPVLIFITENHGHYYAYVRLCKSHSLSKYTLLLEKEEKSVKPNFTARVDGKFISL
                     VSLSSDGCIYETLIPIYSSDTEQNQRLVRALMLKSVVSGGVRNGVALTILDQDHIAVL
                     GPPLSASKECLSIWNIKFQTLQTSKELPQGTSGQLWYHGEVLFMLHGKSLTVIPYKCE
                     ESSLAGALGKLKHTQESGTHSVPHFVNWETCSGYELGSSGAEQSRTLRRKKVETNLQP
                     EVPGFKQLLSIIKKDSEKHIEVELRKFLAKSTPAFHTIIGDLVAGLVGRCKAEPSFYP
                     RNCLTQLIQTHVLSYSLCPDLMEIALEHTDVQMLQLCLQQFPDIPESTTCACLKLFLS
                     VGDDCLRDSNINMESVFDYSDSTQDEKKEMEEQIEIVQNGFGPEDGNCSEDSQQLNDK
                     PADTAHEPGSFPVTSCPVAPKRAALLNAVLHSAYSEPFLLPHLKDIPAKHVTLFLQYL
                     YFLYLKCTGSATMTLPGVNPPTVSQIMDWICLLLDANFTVLLMIPEAKRLLLILYNFV
                     KSQISIYSELNKIAVSFRELQRLNREKSSRGLYSIEVLELF"
     exon            266..379
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            380..436
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            437..585
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            586..643
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            644..788
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            789..977
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1054
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1178
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1264
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1339
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1521
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1647
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1899
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1900..1978
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1979..2071
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2072..2179
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2180..3170
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2869..2874
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2894
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="major polyA site"
     regulatory      3142..3147
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="hexamer: TATAAA"
     polyA_site      3164
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="major polyA site"
ORIGIN      
        1 ctcttccgcc cgccaggggt cgcagttctg ctcgagctga ttttcctcct tggtgtcggt
       61 cgctctcgcg agaggaagca caaaggctgc cgggaagcat gcccgggctg taggccaacc
      121 caaaatggca accctggaag aagaattcac gttgtctact ggagtcttag gcgccgggcc
      181 tgagggattc ctaggtgtag agcagactga caaagccgac cagttcctag tgacggacag
      241 cggcaggacc gtcgtccttt acaaggtttc tgaccagaaa ccgttgggca gctggtcggt
      301 gaagcaaggt cagagtataa catgccctgc tgtgtgcaac tttcagactg gagagtatat
      361 tatggtacat gaccataagg ttttgagaat atggaataat gatgacgtaa acgtggataa
      421 agtattcaaa gctacactgt cagctgaagt ccatagaatc cactcagtac aaagaacaga
      481 acccttggtg ctgttccgag gaggcgctgc tcgtgggcta gaggccttgc ttgtagagcc
      541 ccagcagaac atcgaatctg tcatacctga tgaggaagtg atcgtgtggt cagaggtttt
      601 catgttattt aagcaaccag ttttaatttt tattactgaa aatcatggtc attattatgc
      661 ttatgtacga ttatgcaaat cacacagctt aagcaaatac acactcttac ttgaaaaaga
      721 agaaaaatct gttaaaccaa attttactgc acgtgtggat gggaaattca tctccctggt
      781 gtcgctaagc tctgatgggt gtatatatga aaccttgata ccaatatatt caagtgacac
      841 agaacaaaac cagaggttag ttagagcatt gatgctcaag tcagttgtgt ctggcggtgt
      901 tcgaaatggt gttgccctca ccatcctgga tcaagaccac atagctgtcc tgggacctcc
      961 actttcagct tctaaggagt gcctctccat atggaacata aagtttcaaa cattacagac
     1021 gtcaaaagag ctgccacaag gaaccagtgg gcagctctgg tatcatgggg aagtactatt
     1081 catgctacat ggaaaaagtc taactgtgat tccatacaag tgtgaagaat cgtctctagc
     1141 aggcgctctt ggaaaactca agcacacaca agagtcaggc actcattctg tgccccactt
     1201 tgtaaactgg gaaacatgtt caggatatga acttgggtcc tccggtgcag agcagtcaag
     1261 aactcttagg agaaaaaaag ttgaaacaaa tttacagcca gaagttccag gattcaaaca
     1321 acttttatca ataataaaga aagattcaga aaagcacatt gaagtagaac tccgtaagtt
     1381 tttggcgaag tcaacacctg cctttcatac tataattgga gacttagtag cagggcttgt
     1441 gggaagatgt aaagccgagc catcgtttta cccccggaac tgtctgacac agctcatcca
     1501 aacacacgtg ctttcctaca gcttatgccc tgacttgatg gagattgccc tagagcacac
     1561 agatgtgcag atgttacagc tgtgtctaca gcagttccct gacattcctg agtccaccac
     1621 ctgtgcttgc ttaaaacttt tcttgagcgt tggtgatgac tgtcttcgag acagtaatat
     1681 caacatggag tcagtttttg attatagtga ttccacacaa gatgagaaaa aggaaatgga
     1741 agagcaaatt gaaattgttc agaatggctt tggacctgaa gatgggaact gcagtgaaga
     1801 tagtcagcag ttaaatgata agcctgcaga cacagcacac gagcccggct ccttccctgt
     1861 gacctcatgt cctgtggcac caaagcgagc agctctgcta aatgcagtcc ttcattccgc
     1921 atacagtgag cccttcctcc tgccgcactt gaaggacatc cctgcgaagc atgtcacgct
     1981 gtttctccag tatttgtatt tcctctattt gaagtgtact ggcagtgcta ccatgactct
     2041 ccctggagtg aaccctccaa ccgtgagcca gattatggat tggatatgcc tacttctaga
     2101 tgctaatttt actgtcctat taatgatacc agaagcaaaa agacttttac ttattcttta
     2161 caattttgtg aaatctcaga tctccatcta ttccgagctc aacaagatcg cagtcagctt
     2221 ccgggagctg cagagattaa atcgggagaa gagcagtaga ggactgtact ccatcgaagt
     2281 gctggaactc ttctgacagt cttgctggct gttctgaact ggatatatgg accaggctgg
     2341 ccgcgaactc agagatccac ctcccaaagt gctgggagta aaggtgtggc caccacacct
     2401 aacttgatgg atatatattt tttttaatat gaatcttcct gttcgtccag ggaagaaaga
     2461 tttgttagta cccatctcac tcagtgtcca gagagaaata tgagtccctg gaccatcaca
     2521 gaccatcact ccttagtgtg ctgcgggttc cacagaatca cttctaggtt gcagacatca
     2581 ctggagggat gttgtgaaag tttttttaaa catgaaattg agctgatttt aagtaaacgt
     2641 atttgtgtct aattttttac aatgcatttt gaatagtttt tctttcaatc aaagaagcaa
     2701 aaccaggggc tggagagatg gctcagcaat taagagcact gactgctctt tcagagttcc
     2761 tgagttcaat tcctgccaac cacatggtgg cttacaacca tctgtaatgt tatctgatgc
     2821 cctcttctgg tgtgtctgga gatagtgaca gtgtactcac atatatgaaa taaatctttt
     2881 tttgaaaaaa tgaagaagct gcaaaacatc tctgatgagt ggatctaagg agaatgtata
     2941 tcagtctgaa gctgttccca gtcatctgta tcatggagca ctcagggcac caagccagca
     3001 tactgcattg tgcctactgc catttcttca tctttcatct tctaccatct cttctccttt
     3061 ctcgggagtt gagaaattcc ctgttccagc gtggtgtctc agatgaactg tgacaaggat
     3121 atggtaaaga ttggtttaaa ttataaaatc ttattaccaa ataatgaaaa
//
