LOCUS       NM_001161329            3110 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus nucleolar protein 11 (Nol11), transcript variant 2,
            mRNA.
ACCESSION   NM_001161329
VERSION     NM_001161329.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3110)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   2  (bases 1 to 3110)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK076704.1, AK078524.1 and AL596116.14.
            
            On May 8, 2018 this sequence version replaced NM_001161329.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076704.1, AK038696.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2605              AK076704.1         2-2606
            2606-3098           AK078524.1         2557-3049
            3099-3110           AL596116.14        145801-145812       c
FEATURES             Location/Qualifiers
     source          1..3110
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 70.19 cM"
     gene            1..3110
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="nucleolar protein 11"
                     /db_xref="GeneID:68979"
                     /db_xref="MGI:MGI:1916229"
     exon            1..265
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..2236
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="nucleolar protein 11 isoform 2"
                     /protein_id="NP_001154801.1"
                     /db_xref="CCDS:CCDS48965.1"
                     /db_xref="GeneID:68979"
                     /db_xref="MGI:MGI:1916229"
                     /translation="MATLEEEFTLSTGVLGAGPEGFLGVEQTDKADQFLVTDSGRTVV
                     LYKVSDQKPLGSWSVKQGQSITCPAVCNFQTGEYIMVHDHKVLRIWNNDDVNVDKVFK
                     ATLSAEVHRIHSVQRTEPLVLFRGGAARGLEALLVEPQQNIESVIPDEEVIVWSEVFM
                     LFKQPVLIFITENHGHYYAYVRLCKSHSLSKYTLLLEKEEKSVKPNFTARVDGKFISL
                     VSLSSDGCIYETLIPIYSSDTEQNQRLVRALMLKSVVSGGVRNGVALTILDQDHIAVL
                     GPPLSASKECLSIWNIKFQTLQTSKELPQGTSGQLWYHGEVLFMLHGKSLTVIPYKCE
                     ESSLAGALGKLKHTQESGTHSVPHFVNWETCSGYELGSSGAEQSRTLRRKKVETNLQP
                     EVPGFKQLLSIIKKDSEKHIEVELRKFLAKSTPAFHTIIGDLVAGLVGRCKAEPSFYP
                     RNCLTQLIQTHVLSYSLCPDLMEIALEHTDVQMLQLCLQQFPDIPESTTCACLKLFLS
                     DSTQDEKKEMEEQIEIVQNGFGPEDGNCSEDSQQLNDKPADTAHEPGSFPVTSCPVAP
                     KRAALLNAVLHSAYSEPFLLPHLKDIPAKHVTLFLQYLYFLYLKCTGSATMTLPGVNP
                     PTVSQIMDWICLLLDANFTVLLMIPEAKRLLLILYNFVKSQISIYSELNKIAVSFREL
                     QRLNREKSSRGLYSIEVLELF"
     exon            266..379
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            380..436
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            437..585
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            586..643
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            644..788
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            789..977
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1054
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1178
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1264
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1339
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1521
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1647
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1839
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1840..1918
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1919..2011
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2012..2119
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2120..3110
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2809..2814
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2834
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="major polyA site"
     regulatory      3082..3087
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="hexamer: TATAAA"
     polyA_site      3104
                     /gene="Nol11"
                     /gene_synonym="1500002M01Rik"
                     /note="major polyA site"
ORIGIN      
        1 ctcttccgcc cgccaggggt cgcagttctg ctcgagctga ttttcctcct tggtgtcggt
       61 cgctctcgcg agaggaagca caaaggctgc cgggaagcat gcccgggctg taggccaacc
      121 caaaatggca accctggaag aagaattcac gttgtctact ggagtcttag gcgccgggcc
      181 tgagggattc ctaggtgtag agcagactga caaagccgac cagttcctag tgacggacag
      241 cggcaggacc gtcgtccttt acaaggtttc tgaccagaaa ccgttgggca gctggtcggt
      301 gaagcaaggt cagagtataa catgccctgc tgtgtgcaac tttcagactg gagagtatat
      361 tatggtacat gaccataagg ttttgagaat atggaataat gatgacgtaa acgtggataa
      421 agtattcaaa gctacactgt cagctgaagt ccatagaatc cactcagtac aaagaacaga
      481 acccttggtg ctgttccgag gaggcgctgc tcgtgggcta gaggccttgc ttgtagagcc
      541 ccagcagaac atcgaatctg tcatacctga tgaggaagtg atcgtgtggt cagaggtttt
      601 catgttattt aagcaaccag ttttaatttt tattactgaa aatcatggtc attattatgc
      661 ttatgtacga ttatgcaaat cacacagctt aagcaaatac acactcttac ttgaaaaaga
      721 agaaaaatct gttaaaccaa attttactgc acgtgtggat gggaaattca tctccctggt
      781 gtcgctaagc tctgatgggt gtatatatga aaccttgata ccaatatatt caagtgacac
      841 agaacaaaac cagaggttag ttagagcatt gatgctcaag tcagttgtgt ctggcggtgt
      901 tcgaaatggt gttgccctca ccatcctgga tcaagaccac atagctgtcc tgggacctcc
      961 actttcagct tctaaggagt gcctctccat atggaacata aagtttcaaa cattacagac
     1021 gtcaaaagag ctgccacaag gaaccagtgg gcagctctgg tatcatgggg aagtactatt
     1081 catgctacat ggaaaaagtc taactgtgat tccatacaag tgtgaagaat cgtctctagc
     1141 aggcgctctt ggaaaactca agcacacaca agagtcaggc actcattctg tgccccactt
     1201 tgtaaactgg gaaacatgtt caggatatga acttgggtcc tccggtgcag agcagtcaag
     1261 aactcttagg agaaaaaaag ttgaaacaaa tttacagcca gaagttccag gattcaaaca
     1321 acttttatca ataataaaga aagattcaga aaagcacatt gaagtagaac tccgtaagtt
     1381 tttggcgaag tcaacacctg cctttcatac tataattgga gacttagtag cagggcttgt
     1441 gggaagatgt aaagccgagc catcgtttta cccccggaac tgtctgacac agctcatcca
     1501 aacacacgtg ctttcctaca gcttatgccc tgacttgatg gagattgccc tagagcacac
     1561 agatgtgcag atgttacagc tgtgtctaca gcagttccct gacattcctg agtccaccac
     1621 ctgtgcttgc ttaaaacttt tcttgagtga ttccacacaa gatgagaaaa aggaaatgga
     1681 agagcaaatt gaaattgttc agaatggctt tggacctgaa gatgggaact gcagtgaaga
     1741 tagtcagcag ttaaatgata agcctgcaga cacagcacac gagcccggct ccttccctgt
     1801 gacctcatgt cctgtggcac caaagcgagc agctctgcta aatgcagtcc ttcattccgc
     1861 atacagtgag cccttcctcc tgccgcactt gaaggacatc cctgcgaagc atgtcacgct
     1921 gtttctccag tatttgtatt tcctctattt gaagtgtact ggcagtgcta ccatgactct
     1981 ccctggagtg aaccctccaa ccgtgagcca gattatggat tggatatgcc tacttctaga
     2041 tgctaatttt actgtcctat taatgatacc agaagcaaaa agacttttac ttattcttta
     2101 caattttgtg aaatctcaga tctccatcta ttccgagctc aacaagatcg cagtcagctt
     2161 ccgggagctg cagagattaa atcgggagaa gagcagtaga ggactgtact ccatcgaagt
     2221 gctggaactc ttctgacagt cttgctggct gttctgaact ggatatatgg accaggctgg
     2281 ccgcgaactc agagatccac ctcccaaagt gctgggagta aaggtgtggc caccacacct
     2341 aacttgatgg atatatattt tttttaatat gaatcttcct gttcgtccag ggaagaaaga
     2401 tttgttagta cccatctcac tcagtgtcca gagagaaata tgagtccctg gaccatcaca
     2461 gaccatcact ccttagtgtg ctgcgggttc cacagaatca cttctaggtt gcagacatca
     2521 ctggagggat gttgtgaaag tttttttaaa catgaaattg agctgatttt aagtaaacgt
     2581 atttgtgtct aattttttac aatgcatttt gaatagtttt tctttcaatc aaagaagcaa
     2641 aaccaggggc tggagagatg gctcagcaat taagagcact gactgctctt tcagagttcc
     2701 tgagttcaat tcctgccaac cacatggtgg cttacaacca tctgtaatgt tatctgatgc
     2761 cctcttctgg tgtgtctgga gatagtgaca gtgtactcac atatatgaaa taaatctttt
     2821 tttgaaaaaa tgaagaagct gcaaaacatc tctgatgagt ggatctaagg agaatgtata
     2881 tcagtctgaa gctgttccca gtcatctgta tcatggagca ctcagggcac caagccagca
     2941 tactgcattg tgcctactgc catttcttca tctttcatct tctaccatct cttctccttt
     3001 ctcgggagtt gagaaattcc ctgttccagc gtggtgtctc agatgaactg tgacaaggat
     3061 atggtaaaga ttggtttaaa ttataaaatc ttattaccaa ataatgaaaa
//
