LOCUS       XM_006500956            2250 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus nocturnin (Noct), transcript variant X1,
            mRNA.
ACCESSION   XM_006500956
VERSION     XM_006500956.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..2250
                     /gene="Noct"
                     /gene_synonym="Ccr4; Ccrn4l"
                     /note="nocturnin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 14 ESTs, 395 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:12457"
                     /db_xref="MGI:MGI:109382"
     CDS             31..1149
                     /gene="Noct"
                     /gene_synonym="Ccr4; Ccrn4l"
                     /codon_start=1
                     /product="nocturnin isoform X1"
                     /protein_id="XP_006501019.1"
                     /db_xref="GeneID:12457"
                     /db_xref="MGI:MGI:109382"
                     /translation="MALPVSSMGNGTSRLYSALAKTVNSSAAAQHPEYLVSTDPEHLE
                     PIDPKELLEECRAVLHTRPPRYQRDFVDLRTDCSSSHSPIRVMQWNILAQALGEGKDN
                     FVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPK
                     PWSPCLDVEHNNGPDGCALFFLQNRFKLISSTNIRLTAMTLKTNQVAIAQTLECKESG
                     RQFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYK
                     HFASSSLNLNSAYKLLSPDGQSEPPYTTWKIRTSGECRHTLDYIWYSRHALSVTSALD
                     LLTEEQIGPNRLPSFHYPSDHLSLVCDFSFNEEPHELF"
ORIGIN      
        1 aactcatcag ctggggaacg gaagtgagaa atggctttac cagtgagttc catgggaaac
       61 ggcaccagtc gactctacag tgctctcgcc aagaccgtca acagcagtgc agctgctcag
      121 cacccggagt acttggtgtc aactgacccc gaacatctgg agcccatcga tcctaaggaa
      181 cttctggagg aatgcagggc tgttctgcac actcggccac cccgctacca gcgggatttt
      241 gtggacctga ggacagattg ctccagcagc cactctccca ttcgcgtcat gcagtggaac
      301 atcctcgccc aagctctcgg agaaggcaaa gacaactttg tgcagtgccc cgtggaagcg
      361 ctcaaatggg aagagaggaa gtgcctgatc ctggaggaga tcctggctta ccagccagac
      421 atactgtgcc tccaggaagt ggaccactac tttgacacct tccagccact cctcagtaga
      481 ctgggctacc aaggcacgtt tttccccaag ccctggtcac catgtctaga tgtggaacac
      541 aacaacggtc cagatggctg tgccttattt tttctccaaa accgattcaa gcttatcagc
      601 agcaccaata ttaggctgac agccatgacc ctaaaaacca atcaggtggc catcgcacag
      661 accctggagt gcaaggagtc tgggcgacag ttctgcattg ctgtcaccca cttaaaagcc
      721 cgcactggct gggagcggtt ccggtcagct cagggctgtg acctcctcca gaacctgcag
      781 aacatcaccc agggagcaaa gatccccctg atcgtctgcg gggacttcaa cgcagagcca
      841 accgaagagg tctacaaaca ctttgcgtcc tccagcctca acctcaacag cgcctacaag
      901 ctgctgagtc ccgatggaca gtcggagcct ccctacacaa cctggaagat ccggacctca
      961 ggcgagtgtc gccacacgct ggactatatc tggtactcca gacatgctct gagtgtcacg
     1021 tccgccctgg atctactcac tgaagaacag attgggccca accggctccc atccttccat
     1081 tacccctcgg accacctgtc cctggtgtgt gacttcagct ttaacgagga gccccatgag
     1141 ctcttttaat cacaagcgtc ttaaccaggg atgttttggg aaactgaact aggataggaa
     1201 gttgcctgga aaaggacacc cagtttctgc cactactctc catcatttcc agcatgccct
     1261 tgaaaaaaca ttgttcacaa acctttccag ctaaaacccg cattgaaaag gtgtttgcac
     1321 tccagtttga gcttgttgtt catctgtgta ccatcctcta ccatttaggg gcattagtag
     1381 cataggcttt cttgtttttt agttgagggt attataaaaa cccagtttgt aagcccttca
     1441 gaattaaagt aagatgtagg aagttttcta gacatcattt caagttattt atttgtggga
     1501 tttttaaatg tcagtgggaa aaaaaatgca tggtaatatt tattttttta tatcttaatg
     1561 taaaataaag tggattatct agcattgtgg acattttaga accatgcagg tacagtctta
     1621 attccttaaa aattaaaatg tctctatttg ctgatcgaac aggatgtaca ctaaggaact
     1681 atttagccct gggggattgg tgactttgtg tgtacattct tcacaaataa ttcctgtttg
     1741 ctatgccttt gacttctctg ttgtgtttta aagaaattcc gtagcattca gttctttagt
     1801 ttccactgtt tagtcactgc taggcacttg tgccttttct gttgtgatga cgttggtaga
     1861 cgtgtgaaga ttactccaat cacttctcct gggatgtgct ttttataagt agctttagga
     1921 acagctctgg aacagttgct aagaatatta gtgagaaacc ttgccaagac gacagacatg
     1981 agcccaacat tcagctgaga caagaaagct cacgtcttgg aggccagctt gggctatatg
     2041 tcaagaccct ttcttgaaaa agccagatga ctggattcaa gttttctaga aaaatataag
     2101 agtcaaaaag ataacctgga gttctctttc aattgttgaa gcctcttcca aacaaaatat
     2161 ccttccagtg gtaaaatggt aaatatctta atgtatgagt tctaaatatt acttaaggtt
     2221 aataaatgga cttacaaaga gtgcttttaa
//
