LOCUS       NM_001042612            3277 bp    mRNA    linear   ROD 04-APR-2024
DEFINITION  Mus musculus NLR family, pyrin domain containing 9C (Nlrp9c), mRNA.
ACCESSION   NM_001042612
VERSION     NM_001042612.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3277)
  AUTHORS   Kanzaki,S., Tamura,S., Ito,T., Wakabayashi,M., Saito,K., Kato,S.,
            Ohta,Y., Sekita,Y. and Kimura,T.
  TITLE     Involvement of Nlrp9a/b/c in mouse preimplantation development
  JOURNAL   Reproduction 160 (2), 181-191 (2020)
   PUBMED   32413845
REFERENCE   2  (bases 1 to 3277)
  AUTHORS   Dade,S., Callebaut,I., Paillisson,A., Bontoux,M., Dalbies-Tran,R.
            and Monget,P.
  TITLE     In silico identification and structural features of six new genes
            similar to MATER specifically expressed in the oocyte
  JOURNAL   Biochem Biophys Res Commun 324 (2), 547-553 (2004)
   PUBMED   15474461
REFERENCE   3  (bases 1 to 3277)
  AUTHORS   Hamatani,T., Falco,G., Carter,M.G., Akutsu,H., Stagg,C.A.,
            Sharov,A.A., Dudekula,D.B., VanBuren,V. and Ko,M.S.
  TITLE     Age-associated alteration of gene expression patterns in mouse
            oocytes
  JOURNAL   Hum Mol Genet 13 (19), 2263-2278 (2004)
   PUBMED   15317747
REFERENCE   4  (bases 1 to 3277)
  AUTHORS   Anderson,J.P., Mueller,J.L., Rosengren,S., Boyle,D.L., Schaner,P.,
            Cannon,S.B., Goodyear,C.S. and Hoffman,H.M.
  TITLE     Structural, expression, and evolutionary analysis of mouse CIAS1
  JOURNAL   Gene 338 (1), 25-34 (2004)
   PUBMED   15302403
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK087873.1, AY596203.1, BB702737.1 and AC161798.6.
            
            On Apr 6, 2018 this sequence version replaced NM_001042612.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: AY596203.1 [ECO:0000331]
            RNAseq introns       :: partial sample support SAMN00849374,
                                    SAMN00849384 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                AK087873.1         2-62
            62-3081             AY596203.1         1-3020
            3082-3275           BB702737.1         318-511
            3276-3277           AC161798.6         69569-69570
FEATURES             Location/Qualifiers
     source          1..3277
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 14.44 cM"
     gene            1..3277
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /note="NLR family, pyrin domain containing 9C"
                     /db_xref="GeneID:330490"
                     /db_xref="MGI:MGI:3028627"
     exon            1..44
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            45..337
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..3081
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /codon_start=1
                     /product="NACHT, LRR and PYD domains-containing protein
                     9C"
                     /protein_id="NP_001036077.1"
                     /db_xref="CCDS:CCDS39843.1"
                     /db_xref="GeneID:330490"
                     /db_xref="MGI:MGI:3028627"
                     /translation="MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTK
                     IKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKN
                     LFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLR
                     KAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPK
                     RILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESS
                     CSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPS
                     MLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLC
                     TLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFAT
                     LFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFG
                     NISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITV
                     DISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINW
                     TMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGD
                     GSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACG
                     IMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHL
                     YEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEIS
                     AVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLAL
                     ALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAV
                     EKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN"
     exon            338..1919
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..2084
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            2085..2249
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            2250..2417
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            2418..2588
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            2589..2759
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            2760..2930
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
     exon            2931..3277
                     /gene="Nlrp9c"
                     /gene_synonym="Nalp-zeta; Nalp9c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcccttcaa taagtactag cccatgggac caggtctgga ctggagtctg agatcatttt
       61 cccaagatgg ttgactcatc tagctatggc ttgctgcagt attttcaaaa actcagtgat
      121 gaagagttcc agagatttaa agagcttctc cagaaagagc aagagaaatt taaactcaaa
      181 ccactctcct ggactaagat taagaacact tccaaagaag acctggtaac gcaattgtac
      241 acacattatc caagacaggt atgggatatg gtgttgaacc tgtttctaca ggtcaatagg
      301 aaagacctct caaccatggc tcagatagaa aggagagata aacaaaataa atacaaagag
      361 tttatgaaga atttatttca atacatatgg acatctgaga ccaacactta tatgcctgat
      421 agaagctaca acaccattat agatcgtcaa tacaaagcat tactggacat atttgattct
      481 gagtcagacc cagctactgc agttgtatta ggtactagag gaaaaggaaa aacagttttt
      541 ttaagaaaag caatgttgga ttgggcatca ggagttttac tgcagaaccg gtttcagtat
      601 gttttcttct tctctgtctt ctcacttaac aataccacag agttaagctt agctgagctt
      661 atctcaagta aattgcctga gtgttctgag acactggatg acattttatc caatccaaag
      721 agaatcttgt ttgttctgga tggatttgat tacctgaaat ttgacttgga actcaggaca
      781 aacttgtgca atgattggag gaagaggctg ccaacacaaa atgttttgag cagtttgcta
      841 cagaaaataa tgctcccaga gtgctctctg cttcttgaat tgggagagtc aagttgttca
      901 aaaattattc ctttgctgca gaatcctagg gagatcatta tgtcaggatt atctgaacag
      961 tctatatatt tctactgtgt gtccttcttc aaaattcagt tgggtgtaga agtctttaag
     1021 gatttaaaga aaaacgaacc attgtttact ttatgcagca atcctagtat gttgtggatg
     1081 atctgtagtt ctttaatgtg ggggcattat tcgagagagg aagtaatctc ttccagtgaa
     1141 tcaacatcag ctatccacac gatatttatc atgagtgcat tcaaatcaat atttggcttg
     1201 ggctcatcta aatacaagag gttcaaatta aagaccctgt gcaccttggc tgtagaggga
     1261 atgtggaaac aggtatatgt gtttgactct gaggacctca ggaggaataa gatatctgaa
     1321 tctgataaga cagtgtggct gaaaatgaaa tttctgcaaa ttcaaggtaa caacattatg
     1381 ttttaccatt ctacactaca gtggtacttt gctaccctgt tctattttct caaacaggac
     1441 aaagacacat atcacccagt tattggaagc ctacctcaac ttttaggaga aatatatgct
     1501 cataaacaga accaatggac ccatgcacag acatttttct ttggaattgc cactaaacat
     1561 gtgatcactt tgcttaaacc atgctttggc aatatatcat tcaaaacaat aagacaggaa
     1621 atcattagat accttaaaag tctcagtcaa ccagagtgta atgagaaact ggtgcatccc
     1681 aagaagttgt tcttctgtct aattgaaaac caggaggaaa gatttgtaag tcaagtgatg
     1741 aatctatttg aagaaattac tgttgatatt agtgatagtg atgatttggg agcagctgaa
     1801 tacagtctgc tgcgagcctc aaaattgaaa aaccttcacc tgcatataca aaagaaagtt
     1861 ttttcagaaa tccatgatcc cgaatatggt agcttagaaa actttaaact ggaccaaaaa
     1921 ttttcagcca tcaattggac tatgttatcc attcttttct gtaacttaca tgtgttggat
     1981 ctgggcagct gtcatttcaa taaaaaggtc atagaggtcc tctgtaattc tttgtctcca
     2041 actcctaata tgcctctgac tgtttttaag ctccaaagat tgttgtgttc cttcatgact
     2101 aactttggag atggttcatt attttgcaca tttcttcaga taccacaact gaaatacctg
     2161 aacctgtatg gcactgatct ctctaatgat gtggttgaga tgctgtgctc agctctgaaa
     2221 tgttcaacat gtcgagtgga ggagctgttg ttgggaaaat gtgacatatc aagtgaggct
     2281 tgtggcataa tggcaacttt ccttatcaac tctaaggtga aacatctctc attggttgaa
     2341 aatcccttga agaacaaagg agtgatgttt ctgtgtaaaa tgctgaagga cccaagctgt
     2401 gttctggaat cactgatgtt gtcttactgc tgtctcacat tcattgcctg tggacatctc
     2461 tatgaagctc ttttaagcaa caaacacctc tctctccttg atctgggatc aaatttcctg
     2521 gaagatattg gagtgaacct tctgtgtgaa gctttgaaat atccaaactg caccctcaag
     2581 gagttatggt tgcctggttg ctatttaact tcagaatgct gtgaagagat ctcggctgtc
     2641 ctgacttgca ataaaaatct aaagaccctg aaacttggca acaataacat acaagacact
     2701 ggtgtcaaac ggttatgtga agctctgtgt catcctaaat gtaaagtgca gtgtcttggg
     2761 ttagacatgt gtgagctcag caatgactgt tgtgaagacc tggcattggc tcttatcact
     2821 tgcaacacat tgaagagctt aaatctggac tggaatgcct tgcatcactc tgggctggtg
     2881 atgctctgtg aggctctgaa ccacaaaaag tgtaaactga atatgcttgg actggacaaa
     2941 tcttcatttt ctgaggaatc acagacattt ctgcaagctg tggaaaagaa aaataacaat
     3001 ctgaatgttt tgcattttcc ctgggttgaa gatgaactca aaaagagggg ggttcgtctg
     3061 gtatggaaca gcaagaattg atctgtaaca aaggcttatc ctttttttat gtttctcctg
     3121 tataccctgt cccaagttgt acaccatggt actggtggct gtctccagag ctgttcttcc
     3181 acattgttcc acccccaccc ttctttacat ctcccctcac cactttgcaa tgtttatatt
     3241 acaagcacat taaataaaca ctaagcatgt ttgaaaa
//
