LOCUS       XM_036162145            5223 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuroligin 4-like (Nlgn4l), transcript
            variant X1, mRNA.
ACCESSION   XM_036162145
VERSION     XM_036162145.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 27, 2025 this sequence was replaced by
            NM_001436325.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5223
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..5223
                     /gene="Nlgn4l"
                     /note="neuroligin 4-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 1 EST, 89 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100113365"
                     /db_xref="MGI:MGI:3775191"
     CDS             808..3645
                     /gene="Nlgn4l"
                     /codon_start=1
                     /product="neuroligin 4-like isoform X1"
                     /protein_id="XP_036018038.1"
                     /db_xref="GeneID:100113365"
                     /db_xref="MGI:MGI:3775191"
                     /translation="MPAPAPALLCLALALASAQPSPPPPPPFPVVATNYGKLRGVRAA
                     LPGDVLGPVTQFLGVPYAAPPTGERRFQPPEPPSSWAGVRDATRFAPVCPQHLDERAL
                     LRDRLPAWFAANLDAIAAYVQDQSEDCLYLNLYVPGGANGKKMADDVTGNDHGDDQDS
                     RDPGVGGAAAAAARKPVMVYIHGGSYMEGTANIVDGSVLASYGDVIVVTVNYRLGVLG
                     FLSTGDQAAKGNYGLLDQIQALRWVEENAGAFGGDPDRVTVFGSGAGASCVSLLTLSH
                     YSEGLFQKAIIQSGTALSSWAVNYQPARYARALGERVGCATPDPGSPPGSPPGWDSAS
                     LVSCLRGKAAGELARARVTPATYHVAFGPTVDGDVIPDDPQILMEQGEFLNYDIMLGV
                     NQGEGARFVDGLGGGHDGGYGGYGGGYGGGVEDDEVQDGGPDGAAGGVSAGEFDLAVS
                     GFINDLYGRPEGRGDALRETVKFMYTDWADRDSPEARRKTLVALFTDHQWVAPAVATA
                     DLHARYGSPTYFYAFYHRCHGGGGGGGGVDGVAGGVAGGVGGEEARPAWADAAHGDEV
                     PYVFGVPMAGPGDVFGCNFSRNDVMLSAVVMTYWTNFAKTGDPNQPVAQDTRFVHTRP
                     NRFEEVAWAKYDPRGQLYLHIGLRPRVRDHYRAAKVAFWLELVPHLHGLAADPGAYLS
                     AAATRAAPSGDPDRDPGGGGGGRRRPRPATRRPAVMTSSSMASGSGMTSSSGSGMTSS
                     SGSSASAVLIETRRDYSTELSVTIAVGASLLFLNVLAFAALYYKKDKRRHETHRRPPP
                     PRPPQAPPSAAAADRNPRPDPGPAGRRGGECGAVVTAMAAEASAGGLGHDGVGGVGVG
                     GVIGGVAGLRLACPPDYALTLRRSPDDVPRAGAGPGAMTLIPGALGGGGGGAVHGFNT
                     FGSGVGVAGVAGVATSQAGPGLPHGHSTTRV"
ORIGIN      
        1 tccgccgccg ccgccgccgg gtccgccatt ttctgcggcg cgcggtggat tctgggagaa
       61 tccgcggctg cgtgcggagc ccgggcctcc tcggccgccg cgcccgcccc gccccccgtg
      121 acccccgtga ccccggggtc ggaggccgca ggcaggtgcc cctccccatc cctggccccc
      181 gctgacctct gacccccaca acatggcgtc cactgacatc acaaggcccc gtggggggcg
      241 tggccggctt ccagcctgag aggccccgcc cccacacagg aagtgggtgg agaccaggtc
      301 gcccggcggc catgatggat ccggagcggt gacgtcgcct ggccccgccc taactcagcc
      361 tacgctgtga ttgacgggtg gcctgcccca ccccccccac gccgcggtga cgtcacagga
      421 agtggcaggg ctgcggcagg aagtgttgcg ctgagccaga agcggtcgga acggacagga
      481 agtgacctca ccctaggccc gtggttgccg tgacgaaaca ggaagtgacc tcaggaggga
      541 ccggaagtga ccgggtcacc cacgaacccg cccacccgcg acaggaagtg accgtgcagt
      601 cgcagggagc agccaggggg cgaccggaag tgacgtcgcc gtgacaggaa gtgacgtcgc
      661 cgtgacagga agtggctgcg tgaccggaag tgacgtcgcc gtgaccggaa gtggctgcgt
      721 gaccggaagt gacgtcgccg tgaccagatg tgacgtcgcc gtgacaggaa gtgacatcac
      781 cgtgacagga agtctctgcc ggccgccatg cccgcccccg cccccgccct tttgtgcctc
      841 gccctcgccc tggcatccgc ccagccgtcc ccgccgccgc cgccgccgtt ccccgtggtg
      901 gccacgaact acgggaagct gcgcggggtg cgggcggcgc tgccgggcga cgtgctgggc
      961 cccgtgacgc agttcctggg cgtgccctac gcggccccgc ccaccggcga gcgccgcttc
     1021 cagccgcccg agccgccgtc ctcctgggcc ggcgtccgcg acgccacgcg gttcgcgccc
     1081 gtctgcccgc agcacctgga cgagcgcgcg ctgctgcgcg accgcctccc cgcctggttc
     1141 gccgccaacc tcgacgccat cgccgcctac gtccaggacc agagcgagga ctgcctgtac
     1201 ctcaacctct acgtgcccgg cggagccaac ggtaagaaaa tggccgacga tgtcaccggc
     1261 aacgaccacg gtgacgacca agactcccgt gaccccggcg tgggcggcgc ggcggcggcg
     1321 gcggcgagga agccggtcat ggtttacatc cacggcggct cctacatgga gggcaccgcg
     1381 aacatcgtgg acggcagcgt cctcgccagc tacggcgacg tcatcgtcgt caccgtcaac
     1441 taccggctcg gcgtgctcgg cttcctgagc acgggcgacc aggccgccaa gggcaactac
     1501 gggctgctgg accagatcca ggcgctgcgc tgggtggagg agaacgcggg cgccttcggc
     1561 ggggaccccg accgcgtcac cgtcttcggc tccggcgccg gcgcctcctg cgtcagcctc
     1621 ctcacgctgt cgcactactc ggagggcctg ttccagaagg ccatcatcca gagcgggacg
     1681 gcgctgtcga gctgggcggt gaactaccag ccggcccggt acgcgcgggc gctgggcgag
     1741 cgcgtgggct gcgcgacccc cgacccgggg tcgccgccgg ggtcgccgcc gggttgggac
     1801 tcggcgtcgc tggtgtcctg cctgcggggc aaggcggcgg gcgagctggc gcgggcccgc
     1861 gtgacgcccg cgacctacca cgtggcgttc gggccgacgg tggacggcga cgtcatcccc
     1921 gacgaccccc agatcctgat ggagcagggc gagttcctca actacgacat catgctcggc
     1981 gtcaaccagg gcgagggcgc gcgcttcgtc gacggcctcg gcggcggcca cgacggcggc
     2041 tacggcggat acggcggcgg gtacggcggc ggcgtcgagg acgacgaggt ccaagatggc
     2101 ggcccggacg gcgccgcggg cggcgtgtcg gcgggcgagt tcgacctggc ggtgtccggc
     2161 ttcatcaacg acctctacgg ccgccccgag ggccgcggcg acgccctgcg cgagacggtg
     2221 aagttcatgt acaccgactg ggccgaccgc gacagccccg aggcgcggcg caagacgctc
     2281 gtggcgctct tcaccgacca ccagtgggtg gcgcccgccg tggccaccgc cgacctccac
     2341 gcccgctacg gctcccccac ctacttctac gccttctacc accggtgcca cggcggcggc
     2401 ggcggcgggg gcggcgtgga cggggtcgcc ggcggggtcg cgggcggggt cggcggcgag
     2461 gaggcccggc ccgcctgggc ggacgcggcc cacggcgacg aggtgcccta cgtgttcggc
     2521 gtccccatgg ccgggcccgg cgacgtcttc ggctgcaact tctcgcgcaa cgacgtcatg
     2581 ctcagcgccg tcgtcatgac ctactggacc aacttcgcca agacggggga cccgaaccag
     2641 ccggtggcgc aggacacgcg cttcgtccac acccgcccca accggttcga ggaggtggcc
     2701 tgggccaagt acgacccccg gggtcagctg tacctgcaca tcgggctccg cccccgcgtg
     2761 cgcgaccact accgcgccgc caaggtggcg ttctggctgg agctggtgcc gcacctgcac
     2821 ggcctcgccg ccgacccggg cgcctacctc agcgccgccg ccacgcgggc cgcgccgtcc
     2881 ggcgaccccg accgcgaccc cgggggagga ggcggcggcc gccgtcgccc gcgccccgcc
     2941 acgcggcgtc ccgcggtgat gacgtcgtcg tcgatggcgt cgggctcggg gatgacgtcg
     3001 tcgtccggct cggggatgac gtcgtcgtcg gggtcgtcgg cgtccgcggt gctgatcgag
     3061 acgcggcgcg actactcgac ggagctgagc gtgacgatcg cggtgggggc ctcgctgctc
     3121 ttcctcaacg tcctcgcctt cgccgcgctc tactacaaga aggacaagcg ccggcacgag
     3181 acgcaccgca ggccgccccc gccacgcccc ccgcaggccc cgccctccgc cgccgccgcc
     3241 gaccggaacc cgcgacccga ccccgggccg gccggccggc gtggcgggga gtgcggtgca
     3301 gtggtcaccg cgatggcggc ggaggcgtcg gcgggcggcc tgggccacga cggcgtcggc
     3361 ggggtcgggg tcggcggggt catcggcggg gtcgccggcc tgcgcctggc ctgcccgccc
     3421 gactacgcgc tgaccctgcg gcgctcgccc gacgacgtcc cccgggccgg ggccgggccg
     3481 ggcgccatga cgctcatccc cggggcgctg ggtggaggcg gcggcggcgc cgtgcacggg
     3541 ttcaacacct ttgggagcgg ggtcggcgtc gccggggtcg ccggggtcgc gacctcgcag
     3601 gccgggccgg ggctgcccca cggacactcg accacccggg tatagcgtgg cgagcgcggg
     3661 agcttggcgg gggcggagcg tggactcctg tgaagccccg cccacccggc ccaaaagccc
     3721 cgccccgccc ggcgaggccc cgcccacagc cgcggacatg caggggcctt ggctacggca
     3781 ggcgatgacg tcaccgccct gaccacgccc ccttccccgt cgcgggacat gaggtcgact
     3841 gagggggcgg agtcagggca gtgggtgggg tccggatggt aacggggaac cggatagaac
     3901 cggatgggac cgcattgatc cggagggaac cggatggaac tggattgagc cgggtcagca
     3961 cgggttggac tggattgaac cggattaatc cggatggagc cggtgatgcc aggcctgagc
     4021 tgagcagcct ggtgtgggcg gaaccggatg agaccggata aaaccggcct gaacccgcgc
     4081 gcgcgaccag caccgagctg gtcgatgtgg accaaacctg aatggaccgg attggaccgg
     4141 gctacgccgg ctggatccgg atccgactgg gcgggaccga gaccggatgg gaccggatgg
     4201 aaccggttca gaccgggctc ggctggatca gactggacgg agggggttgg cgcggaccaa
     4261 ggcaagggcg ccgggtcgga cctgacgcag ccggacaaga ccggttcgga ccaggcggaa
     4321 ccggattggg ctgtgtccct gtgggcagaa ccggatttta ctggatttta ccggatggga
     4381 caggaatgga cgagagcagc gtgaactgca tgaaaccgct ttagaccgga atgaaccgga
     4441 atgaaccgga tcaagtggga gaccggatgg catccagggc actggacaga tccggactga
     4501 actggaacgg accggatcga tccggatggg accggatgga gccgcgtcgc ctcgcacggc
     4561 cccgggcacg cggacggcgg acattttaca ttttatcgtc aatgacgctc acggccgcga
     4621 gtgaggtcat cggggagcgg tgggggatgg aggggggcgg agtcttattt tttattagaa
     4681 ttcggatcgc gtcgtttcct ccctggcgcc cgacagagcc gggtgcgcgg ttgccgccac
     4741 gattctatct ttcctcattt ttaattttat ttctatttat ttttggttat atttttaatt
     4801 ttttattata ctttttattt attgtgtatc tttattttta aattattttt agcgccgcgt
     4861 cggcgcaccg acgtttccgg attttttttt ttttttaatc acccaaattt gaaacttaat
     4921 tttttttaat tttttttttt aatttttttt tcggcctaaa ataatttttt ttttcacgta
     4981 gaaaaaggaa aaccttggaa ttccggggaa aattttaatt ttcagcgtcc ttgagaaaga
     5041 cgcttcgcat cctcacaggt ttcaatgtta ggcaaatttt atgtaaatcg tatttaaatt
     5101 ttatgtaaat ttttactttc cccttttttt ttgcaatttt tattttattt tattttttca
     5161 gttttcgggc aacgacggag aaaatgggcg ggaaaaaatc agaaaattaa aataatttaa
     5221 ata
//
