LOCUS       XM_006499301            1602 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NK2 homeobox 4 (Nkx2-4), transcript variant
            X1, mRNA.
ACCESSION   XM_006499301
VERSION     XM_006499301.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..1602
                     /gene="Nkx2-4"
                     /gene_synonym="1700001P03Rik; Nkx-2.4; tinman"
                     /note="NK2 homeobox 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 5 ESTs, 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:228731"
                     /db_xref="MGI:MGI:97349"
     CDS             95..1063
                     /gene="Nkx2-4"
                     /gene_synonym="1700001P03Rik; Nkx-2.4; tinman"
                     /codon_start=1
                     /product="homeobox protein Nkx-2.4 isoform X1"
                     /protein_id="XP_006499364.1"
                     /db_xref="GeneID:228731"
                     /db_xref="MGI:MGI:97349"
                     /translation="MSLSPKHTTPFSVSDILSPIEETYKKFGGVMDGAPPGLGAPLGA
                     AAYRAPPSGPSSQAAAVAAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQF
                     PHSAMGSYCNGGLGNMVSRFMGPSAGVNVAGMGSLTGIADAAKSLAPLHAAAPRRKRR
                     VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK
                     AAQQLQQEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQAPTP
                     APELEELSPSPPALHGPGGGLAALDAATGDYGGGVLGANLLYGRTW"
ORIGIN      
        1 gccgccgggc cgaagtggcg gcggcggcga cgagcggccg ccgcgtcccg cccgcgcccg
       61 ccccgggccc ccctacctgg ccgtccgccg agccatgtcg ttgagcccca agcacacgac
      121 gcccttctcc gtttccgaca tcctgagccc catcgaggag acctacaaga agttcggcgg
      181 cgtcatggac ggtgcgccgc ccggcctggg ggcgcccctg ggggccgctg cctaccgcgc
      241 gccaccgagc ggcccctcct cgcaggcggc ggccgtggcg gcgggcatgc agccgcccca
      301 cgccatggcc ggacacaacg cggcggcggc agcagcggcg gcagcggcgg cggccgcggc
      361 ggccgccacc taccacatgc ctcccggcgt ctcgcagttc ccgcacagcg ccatgggcag
      421 ctactgcaac ggcggcctgg gcaacatggt ctccaggttc atggggccgt cggcgggcgt
      481 gaacgtggcc ggcatgggtt cgctgaccgg catcgcggac gccgccaagt cgctggcacc
      541 gctgcacgcg gccgcgccgc gaaggaagcg ccgagtgctc ttctcgcaag cgcaggtcta
      601 cgagctggag cggcgcttca agcagcagaa gtacctgtcg gcgcccgagc gcgagcacct
      661 ggccagcatg atccacctga cgcccacgca ggtcaagatc tggttccaga accatcgcta
      721 caagatgaag aggcaggcca aggacaaggc ggcgcagcag ctgcaacagg agggcggcct
      781 gggccccccg ccgcctccgc cgccgccgtc gccgcgccgc gtggcggtac cggtgctggt
      841 gaaggacggc aagccgtgcc agaacggcgc gggcaccccg acgcctggcc agggaggcca
      901 gcagccgcaa gccccgacgc ccgcgccaga gctcgaggag ctgtcgccca gcccgcccgc
      961 tctgcatggt cccgggggcg gcttagcggc cctggacgcg gccaccgggg actacggcgg
     1021 aggcgtgctc ggcgccaacc tgctctatgg cagaacgtgg tgatgagccc cgagggtctg
     1081 cctgcgactc gcaggatccg ccaagaaact gcaagaacgg atgggggaaa tgtacagatg
     1141 ctgacccttt agtgcatgga gataagaacg aatgagtcac ggagagggtc aggctgctct
     1201 gaacctcttt actgggggtg ggagaaggca acagccccgg accgaataat gtgacaccac
     1261 actctgaggt ggtgatttcc cttctttcag aagttcctaa gttatgcgga agaactgact
     1321 gacggaatac gcattcacca cgttcctaac caaagctctc aagagtttta gaagtcggaa
     1381 actttgttgg tgtttgtatc tctataaatc aaccagcttt tcacgatgaa tccttgaagt
     1441 ggaatttatt ttgggagatt aatttgcaaa gcccctcccc taagtgcaat ttcgttaatg
     1501 cttgattgaa agtaaattga attgtagccc aaagtggatc atatacacag caacgtgatt
     1561 gctgaggaat aactgccatt tgggtaaaat agagaaatgg aa
//
