LOCUS       NM_001013411            3205 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus Na+/K+ transporting ATPase interacting 2 (Nkain2),
            transcript variant 1, mRNA.
ACCESSION   NM_001013411 XM_483888
VERSION     NM_001013411.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3205)
  AUTHORS   Xiao,J., Vemula,S.R., Xue,Y., Khan,M.M., Kuruvilla,K.P.,
            Marquez-Lona,E.M., Cobb,M.R. and LeDoux,M.S.
  TITLE     Motor phenotypes and molecular networks associated with germline
            deficiency of Ciz1
  JOURNAL   Exp Neurol 283 (Pt A), 110-120 (2016)
   PUBMED   27163549
REFERENCE   2  (bases 1 to 3205)
  AUTHORS   Gorokhova,S., Bibert,S., Geering,K. and Heintz,N.
  TITLE     A novel family of transmembrane proteins interacting with beta
            subunits of the Na,K-ATPase
  JOURNAL   Hum Mol Genet 16 (20), 2394-2410 (2007)
   PUBMED   17606467
REFERENCE   3  (bases 1 to 3205)
  AUTHORS   Yue,Y., Stout,K., Grossmann,B., Zechner,U., Brinckmann,A.,
            White,C., Pilz,D.T. and Haaf,T.
  TITLE     Disruption of TCBA1 associated with a de novo t(1;6)(q32.2;q22.3)
            presenting in a child with developmental delay and recurrent
            infections
  JOURNAL   J Med Genet 43 (2), 143-147 (2006)
   PUBMED   15908570
REFERENCE   4  (bases 1 to 3205)
  AUTHORS   Bocciardi,R., Giorda,R., Marigo,V., Zordan,P., Montanaro,D.,
            Gimelli,S., Seri,M., Lerone,M., Ravazzolo,R. and Gimelli,G.
  TITLE     Molecular characterization of a t(2;6) balanced translocation that
            is associated with a complex phenotype and leads to truncation of
            the TCBA1 gene
  JOURNAL   Hum Mutat 26 (5), 426-436 (2005)
   PUBMED   16145689
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY247478.1, AY940478.1, EF058049.2 and AC126430.3.
            
            On Apr 8, 2009 this sequence version replaced NM_001013411.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and it encodes the long isoform.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF058049.2, AY940478.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-204               BY247478.1         4-207
            205-549             AY940478.1         1-345
            550-1504            EF058049.2         483-1437
            1505-3205           AC126430.3         45110-46810
FEATURES             Location/Qualifiers
     source          1..3205
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 17.56 cM"
     gene            1..3205
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /note="Na+/K+ transporting ATPase interacting 2"
                     /db_xref="GeneID:432450"
                     /db_xref="MGI:MGI:1923447"
     exon            1..273
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /inference="alignment:Splign:2.1.0"
     CDS             220..846
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /note="long isoform is encoded by transcript variant 1;
                     sodium/potassium-transporting ATPase subunit
                     beta-1-interacting protein 2; T-cell lymphoma
                     breakpoint-associated target protein 1;
                     Na(+)/K(+)-transporting ATPase subunit beta-1-interacting
                     protein 2; T-cell lymphoma breakpoint associated target 1"
                     /codon_start=1
                     /product="sodium/potassium-transporting ATPase subunit
                     beta-1-interacting protein 2 long isoform"
                     /protein_id="NP_001013429.2"
                     /db_xref="CCDS:CCDS78805.1"
                     /db_xref="GeneID:432450"
                     /db_xref="MGI:MGI:1923447"
                     /translation="MGYCSGRCTLIFICGMQLVCVLERQIFDFLGYQWAPILANFVHI
                     IIVILGLFGTIQYRPRYVTGYAVWLVLWVTWNVFVICFYLEAGDLSKETDLILTFNIS
                     MHRSWWMENGPGCMVTSVTPAPDWAPEDHRYITVSGCFLDYQYIEVAHSSLQIVLALA
                     GFIYACYVVRCITEEEDSFDFIGGFDSYGYQGPQKTSHLQLQPMYMSK"
     exon            274..411
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /inference="alignment:Splign:2.1.0"
     exon            412..492
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /inference="alignment:Splign:2.1.0"
     exon            493..693
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /inference="alignment:Splign:2.1.0"
     exon            694..754
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /inference="alignment:Splign:2.1.0"
     exon            755..836
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /inference="alignment:Splign:2.1.0"
     exon            837..3205
                     /gene="Nkain2"
                     /gene_synonym="6330571D19Rik; Tcba1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtgcagtg aacgagtaaa ggtatgtgtg gcgggcgcgg ctggggcagc cgccgccgcg
       61 caggacactg tcacttccct ggacattggc agcggcatct gggagcccta gagccctggg
      121 caggttctcc tgtccttccc cacgatctga ttggataaac tggggcctcg acggtggccg
      181 acgtgggaca gcctggctgt ggcaggggtc tcggaaacca tgggttattg cagtggcagg
      241 tgcacgctta tctttatctg tggcatgcaa ctggtttgtg tgctagagag gcaaatattt
      301 gatttccttg gatatcagtg ggcacctatc ctggcaaatt ttgtacatat aatcatcgtc
      361 atccttgggt tgtttggaac tattcaatat agacctcgtt acgtaacagg atatgctgtc
      421 tggctagttc tctgggtgac ctggaatgta tttgttatct gcttctattt ggaggctgga
      481 gatctctcaa aggaaacaga ccttatcctg acatttaata tttcaatgca ccgatcttgg
      541 tggatggaga atggaccagg atgtatggtg acgtctgtga cacctgcccc agactgggct
      601 ccagaagacc atcgctacat cactgtctca gggtgttttc tggactacca atacatagaa
      661 gtggctcata gttccctcca gattgtcctc gcactggcgg gcttcatcta tgcctgttat
      721 gttgtgagat gtataactga agaagaggac agctttgact tcataggtgg ctttgattct
      781 tatggatacc aagggcctca gaagacatct cacttacaac ttcaaccaat gtacatgtca
      841 aaataacaca gatggctctg tctgtcagcc catggactcc tcaaatgatt tgtgcggtgg
      901 cctcttgcct tttatgaagc tcaagaagca aatggattta aatacacata catgttatca
      961 gaccaaacag gaagtttcta catagacaca tgagtgaaca cacacacaca cccaccactg
     1021 ccattatcat gcacacatca actacactgg acctcctctt tctgactgaa actgataaat
     1081 atgcaggata cccccatcct agatttcctt aatgcaggtt cccttcttcc agacctttga
     1141 aggtgggaaa ggagctgtat gtgtgtcttc tgcagatccc tacttaccca tctgcagccc
     1201 agccagttgg ctctgtgagg tgccaagtta acccaggcac acaagtttgg aaccctgttc
     1261 tctgcactcc atacaataca tcttgattac accacagcta ctttacttgc aaaaactggt
     1321 cagacagaac atgccatgat gaccttgtac caaatgcaaa atggcaggtc gtttgcccta
     1381 aaggctatac tgtacatact tgccttaaac cacctgcatt gtgtgcccga gactctcagt
     1441 gcaaatgtcc cccagtcaca tcctttaggc gaacacactg ctattaattc cggactattg
     1501 aatcaaggaa taagactgaa ccactcagca gctccagtgt gtctgtaaga aattgatgtt
     1561 ttactactga gcctcttcag tggccacaaa gagacaaaga accaacaaca acagtaactg
     1621 tcatcttcat gtctcttaaa catggtcttc tgatggtgga acaaagtaaa atgtattatt
     1681 ctactaaact cattaatcta ctaaaagcag aaatggcttg actggttggt tttctttctg
     1741 gcactttaag tgcttttcta agtctctgcg aatcgttttt cctaacagag gaaacagttg
     1801 tggatttcta tgacagagac caactatgta ttagctatgt ttactctttt atatctaatt
     1861 caaatccaag atccaatgta ggtgaacttt cttttctaac ttcagcatac aagattattt
     1921 ttggggcggg tgggtggggt gcaatagtta acttagtgga atctttgaga tctctttgtg
     1981 atatttgggg gatctgttgt gtgttatact gtattccaat tctgtattag tgtggcagaa
     2041 gaaaaaaaac gtgctgttga cgtagttggc aatgagatac ctttggagac aatagtagat
     2101 caatgtgttt atgggatatt ctgaactact aggcaattta gttttatatt ttcaagcact
     2161 ctttggtttt cattagtgga agacataatt agctcaagct tatcagtaac acgaatgagt
     2221 catgcttttc ttgaatctac ttgagacact aaattcaagt tttctttagc acatcacctt
     2281 cgtgtgcagt gaaattcaga ctgagaagtt aaacattggc atggaacaac tccttttctt
     2341 ttggtattta cttttctttt agtttcagtt tctgggttaa ccctttttgc attcagatct
     2401 ccattaagac aggccagttg ctgtctttgc aaaaatgttt gcaacacatg cccatttgaa
     2461 cccatttaaa ctcaatgaag gcactaaaaa tggccattga aacataaact tcatgcacaa
     2521 aaaggtttta acactcacac ttgagttttc ccagtggctt gtatatgtca gtgcatacct
     2581 atatgtgtga aatggacagt tgcaaacaca tcagtgaaac ctcatatggt gtttttatag
     2641 tgatatgcat gtttaatgtt tgaggaacta gttgccaatg tactgtcctt ttattcctaa
     2701 aatataaata ctatacatgc cagaagctat tctaatgtga cttttgacat gaggtttcac
     2761 tgcattgctg ctgggatggg attccacctt gtagtacatg tgtagggagg gagtaatata
     2821 agctatcatg tttcctttta agttgcagcc aactctccac caagtcagta tatcatcacc
     2881 accaaagttt tcagaaacag ttgttgacta ctcttgagta gtcagtgggc gggccttttt
     2941 aggagcagta agcaaagtag tgtgattcta gctgggaaac atcaaagctg tcagctgtat
     3001 cctcctcaaa acctggtgaa gaatgctatt tttctaggct gaacttttgt tataaaccta
     3061 atattctgaa agcaagagtt aactatcctg atcagtcttt ttttctcctc ttggatttgt
     3121 taattctgaa tgtattttta acagagtgat ttttttgact ttactagtgt aatttgcatt
     3181 ttaaaaataa atggaaaaat gatta
//
