LOCUS       NM_025623               1500 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus nipsnap homolog 3B (Nipsnap3b), transcript variant 1,
            mRNA.
ACCESSION   NM_025623
VERSION     NM_025623.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   3  (bases 1 to 1500)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL772397.3.
            
            On Jan 4, 2023 this sequence version replaced NM_025623.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC019505.1, AK012480.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               AL772397.3         162929-163044
            117-327             AL772397.3         166012-166222
            328-486             AL772397.3         168046-168204
            487-636             AL772397.3         171179-171328
            637-723             AL772397.3         172108-172194
            724-1500            AL772397.3         172281-173057
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 28.57 cM"
     gene            1..1500
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /note="nipsnap homolog 3B"
                     /db_xref="GeneID:66536"
                     /db_xref="MGI:MGI:1913786"
     exon            1..116
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             57..800
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /note="isoform 1 is encoded by transcript variant 1;
                     nipsnap homolog 3A; protein NipSnap homolog 3A;
                     NIPSNAP-related protein; protein NipSnap homolog 3B"
                     /codon_start=1
                     /product="protein NipSnap homolog 3B isoform 1"
                     /protein_id="NP_079899.1"
                     /db_xref="CCDS:CCDS18186.1"
                     /db_xref="GeneID:66536"
                     /db_xref="MGI:MGI:1913786"
                     /translation="MLALRSGLRTALAPRVLTPQVCSPFATGPRQSNGTFYEFRTYFL
                     KPSKTNEFLENFKNSVHLRTAHSEMIGYWTVEFGGRTNRVFHIWKYDNFAHRTAVRKA
                     LAKDKEWQERFLIPNLAFIDKQEVEITYLVPWCKIGTPPKEGVYELATFQMKPGGPAL
                     WGNAFKRAVNAHVELGYSTLVGVFHTEYGALNRVHVLWWNESADSRAAGRHWSHEDPR
                     VVAAVRESVSYLESQQNTFLIPTSFSPLK"
     exon            117..327
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            328..486
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            487..636
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            637..723
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     exon            724..1500
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1475..1480
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /note="hexamer: AATAAA"
     polyA_site      1500
                     /gene="Nipsnap3b"
                     /gene_synonym="2700063N13Rik; Nipsnap3a"
                     /note="major polyA site"
ORIGIN      
        1 gagagcgcgt atccgagcgc ccggcggcgg tcttcctgcg cgctcaggac cgcaccatgc
       61 tcgcgctccg aagcggccta aggacagcgc tggccccgcg ggttctgacg cctcaggtat
      121 gttcaccttt tgctacaggc cccaggcaaa gcaatggcac attctatgaa ttccgcacct
      181 attttctcaa gccctcaaag acaaatgagt tcctggaaaa ttttaagaac agtgttcacc
      241 ttcggacagc tcactctgaa atgattggct attggactgt agaatttgga ggcagaacga
      301 acagagtttt ccatatttgg aagtatgata attttgctca tcgaactgca gtccgcaaag
      361 ccttggccaa ggataaggaa tggcaggaac gattcctcat tccaaatttg gctttcattg
      421 ataaacaaga ggttgagatt acctacttgg taccatggtg caaaatagga acgcctccca
      481 aggaaggagt ctatgaactg gctacctttc agatgaagcc tggcggccca gctctgtggg
      541 gtaatgcatt taaaagggca gtaaatgccc atgtggagct tggctactct acactagttg
      601 gtgttttcca caccgaatat ggagccctca acagagttca tgttctgtgg tggaacgaga
      661 gtgcagacag ccgagcagct gggagacact ggtctcacga ggaccctaga gtggtggctg
      721 ctgttcggga gagtgtcagt tacctagagt cccagcagaa tacgttcctg attccaacat
      781 cattttcacc actgaagtag tttcctaccc agcccagagc atcccatcac agaggtgagc
      841 tgtatccaca gcgggcactt cctgtctcca agatggagtc gcccagttca ttgtctgaag
      901 gacgggctga gctattacac tgtgacctct gcatcttgaa ggctacctga gtcatttact
      961 acgagtagtt caggaaatgt ttctgttcat tttcataact actggatatc agaaagcatt
     1021 gttactccgt gccctggtac ttcattgttt cacaatatct tgccttctga gatttttatg
     1081 actaagtctt gtattcaaac atgattttga atttttttcc ctcaaagtat ctgtaaatta
     1141 aataaataca atgtctgcct ttttatcatg ttcatttttc ctgaaattta aaactatttt
     1201 ttaccagtaa tcctttcttt gtgataataa gtgggattta tagaaatatt aaatctagta
     1261 tttgtcttta tactttagaa aagtattaat tatggtttca cattcattat taagtcaaaa
     1321 ttggaaaata atatatcctt gagacttggt gtataatacg gtcttagtgt gtttgttttt
     1381 aattgcttgt actactttta actttacctt gaattactca taaatattat gagacactta
     1441 tttatttcaa tgagaaaatg gaaatctctg acctaataaa agccttcaca ttcattctga
//
