LOCUS       NM_028529               1099 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus nipsnap homolog 3A (Nipsnap3a), mRNA.
ACCESSION   NM_028529 XM_485380
VERSION     NM_028529.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1099)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL772397.3, AK006782.1, BY465731.1 and AV260630.1.
            
            On Apr 10, 2009 this sequence version replaced XM_485380.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006782.1, SRR5189679.137454.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                AL772397.3         140281-140306
            27-718              AK006782.1         3-694
            719-725             AL772397.3         148296-148302
            726-1040            AK006782.1         701-1015
            1041-1048           BY465731.1         426-433
            1049-1091           AK006782.1         1024-1066
            1092-1099           AV260630.1         328-335
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 28.57 cM"
     gene            1..1099
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /note="nipsnap homolog 3A"
                     /db_xref="GeneID:73398"
                     /db_xref="MGI:MGI:1920648"
     exon            1..209
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..893
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /codon_start=1
                     /product="nipsnap homolog 3A"
                     /protein_id="NP_082805.1"
                     /db_xref="CCDS:CCDS51177.1"
                     /db_xref="GeneID:73398"
                     /db_xref="MGI:MGI:1920648"
                     /translation="MLALRGSLRRLSQALVHQVCSPFTTGHRQQEGTFYEFCTYYLKP
                     ASVEEFLYNFKKNVHLRTAHSELVGYWTVGFGGRINTVFHIWKYDNFAHRAAVYKALA
                     KDEDWQEQFLIPNLPLIDKQESEITYLVPWCKIGKPPKEGVYELATFLMKPGGPALWG
                     EAFQRAVNAHADQGYIKLIGVFHAEYGLLNRVHVLWWCENADARAAGRRQAHEDPRVV
                     SAVRESVNYLDVQQNMFLIPWSFSPLK"
     exon            210..420
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            421..579
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            580..729
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            730..816
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            817..992
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1099
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1070..1075
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1092
                     /gene="Nipsnap3a"
                     /gene_synonym="1700054F22Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggatcggagc ctacaccaca gaccataaag tgggtcctct gctacccgga gaagtgcggt
       61 gccgctccgc agagcccctt cccagtccag cgtggatcaa accaagcagg agcaggcagc
      121 ggaaagcagt cttcctgcac gctgcaggcc cagccatgct tgctctccga ggcagcctaa
      181 ggaggctttc acaggctctg gtgcatcagg tgtgctcgcc tttcactact ggccacagac
      241 aacaagaagg aacattctat gaattttgta cttattacct taagcccgca agtgtggaag
      301 agttcctgta caattttaag aaaaatgttc atcttcggac agctcattct gaattggtgg
      361 gatattggac tgtaggattt ggaggcagaa taaacactgt attccatatt tggaaatacg
      421 ataattttgc tcaccgtgct gcagtataca aagccttggc caaggatgag gattggcaag
      481 aacagttcct cattccaaat ttgcctctca ttgacaaaca agagagtgaa attacctatt
      541 tggtaccatg gtgcaaaata ggaaagcctc ccaaggaagg agtctatgaa ctggctactt
      601 ttctgatgaa acctggtggc ccagctctat ggggtgaagc atttcaaaga gcagtaaatg
      661 cccatgctga tcaaggctac attaaactaa ttggtgtgtt ccatgcagag tatggattgc
      721 tcaacagagt tcatgttctg tggtggtgtg agaacgcaga cgctcgggca gctgggagac
      781 ggcaagccca tgaagatccc agagtcgtgt ctgctgtccg ggaaagtgtc aactacctag
      841 atgttcagca gaacatgttc ctcattccgt ggtcattttc accactgaaa tagtttccta
      901 acgactgtct taggagctga tgtgacatgt gtcaggggcc agtgcttcaa ttctctctag
      961 agaattattt cagcttttat tggaaggaag tgaatacctc ttctgtaaga caaccctttg
     1021 ttcaatgaga tcgtgtttcc aagtttgtga ccatattttt aaaattatta ataaatatat
     1081 gaattgtttt catcttgtc
//
