LOCUS       NM_145469               3825 bp    mRNA    linear   ROD 04-OCT-2024
DEFINITION  Mus musculus NIPA-like domain containing 2 (Nipal2), mRNA.
ACCESSION   NM_145469
VERSION     NM_145469.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC130713.4 and
            AC152940.2.
            
            On Oct 19, 2007 this sequence version replaced NM_145469.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK033975.1, AK038556.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-148               AC130713.4         62424-62571
            149-217             AC130713.4         90680-90748
            218-389             AC130713.4         92293-92464
            390-449             AC152940.2         204753-204812       c
            450-571             AC152940.2         188954-189075       c
            572-668             AC152940.2         179796-179892       c
            669-804             AC152940.2         164411-164546       c
            805-893             AC152940.2         162502-162590       c
            894-957             AC152940.2         158489-158552       c
            958-1052            AC152940.2         157351-157445       c
            1053-3825           AC152940.2         152580-155352       c
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 14.34 cM"
     gene            1..3825
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /note="NIPA-like domain containing 2"
                     /db_xref="GeneID:223473"
                     /db_xref="MGI:MGI:1924488"
     exon            1..148
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..1165
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /codon_start=1
                     /product="NIPA-like protein 2"
                     /protein_id="NP_663444.2"
                     /db_xref="CCDS:CCDS37058.1"
                     /db_xref="GeneID:223473"
                     /db_xref="MGI:MGI:1924488"
                     /translation="MAAPARTAPEDDASAVLDELSRNFTYWAPGPGNGSLSSAWYRRN
                     QIHLFGVLLAILGNLVISISLNIQKYSHLHLAQKEHPKPYFKSVLWLSGVLLTALGET
                     GNFAAYGVAPITLIAPLGCMSVTGSAIISVIFLKENLRASDLLGMTLAFAGTYLLVNF
                     APNVTQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKHIVVLLTLVALL
                     ASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQVKFLNQATELYTMT
                     TVVPVNHVFFTTSAIIAGIIFYQEFLGAAFLTVFIYLFGCFLSFLGVFLVTRNREKEH
                     LQQSFVDLGDIPGKQMLDKVQPDSNGLSYGTLPDGGDSTRGQCGEKKES"
     exon            149..217
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            218..389
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            390..449
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            450..571
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            572..668
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            669..804
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            805..893
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            894..957
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1052
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..3825
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1685..1690
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /note="hexamer: AATAAA"
     polyA_site      1706
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /note="major polyA site"
     regulatory      3553..3558
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /note="hexamer: AATAAA"
     polyA_site      3577
                     /gene="Nipal2"
                     /gene_synonym="9330161F08Rik; Npal2"
                     /note="major polyA site"
ORIGIN      
        1 ggattcagtc ctcatggcgg ctccggcgcg cacagccccc gaggacgacg cctcggccgt
       61 cctagacgag ctgtctcgga acttcacata ctgggcacca ggcccgggca acggctcgct
      121 gtcgagcgcc tggtatcgca gaaaccagat tcaccttttt ggagttttgc tggccatttt
      181 aggaaacctg gttatcagca tttccctaaa tatccagaaa tattctcatc ttcatttggc
      241 ccagaaagag cacccaaagc catactttaa gagtgtgctt tggctgagtg gagtcctgct
      301 gacagcccta ggagagacag gcaatttcgc agcctatggg gttgccccca tcactctgat
      361 cgcaccactg gggtgcatgt cagttacagg tagtgccata atttctgtta tatttctaaa
      421 agaaaatttg agagcctcgg atttactagg tatgacacta gcatttgcag gaacatattt
      481 attggtgaat tttgctccaa atgtcaccca ggctatctca gcaagaacag tacagtatta
      541 ctttgttggc tggcaattcc tggtctatgt gattttagaa atcctagttt tctgcatcct
      601 tctgtatttc cataaaagga aaggaatgaa gcacattgtg gtcctgctca ccctggtggc
      661 actccttgcc tcattgactg tgatttctgt gaaggctgtc tcaggcatga tcactctttc
      721 tgtgacgggt aaaatgcagc taacttatgc catcttctac atcatgcttg tcatcatgat
      781 agcctcttgc gttttccaag tcaagttcct gaatcaagcc acagaactct acacaatgac
      841 cacagtggtg ccagtcaacc atgttttctt tacaaccagc gccatcatcg caggcatcat
      901 attttaccag gaattccttg gtgctgcttt tctcactgta tttatatatc tttttgggtg
      961 ctttctgtca ttccttggag tatttttagt gacaagaaat agagaaaagg agcatctaca
     1021 acagtctttt gttgaccttg gggatattcc tgggaaacaa atgttggaca aagtacaacc
     1081 agattcaaat ggcttatcct atggaacctt gcctgatgga ggcgactcaa caaggggcca
     1141 atgtggagag aagaaagaat cctaggttga caagagggat ggctgttggc ctgctattca
     1201 ataccacctt ttaaaggatt gcacatgttc gttctgtgtc agcagctatt tcatgctgac
     1261 atgtgtgcac attagattca cttctttccc ccactgtgga caatcagagc cttcctaatc
     1321 tctaacagtc taatgctttc atggaatgta actgcgagtg ctccccacac cctgcatctc
     1381 tccctagcaa tcatctagct ggatcttaac gagagcctgg ctgctggaac aagaatgtca
     1441 cacaaaaatg tgcactagag atctggccat agaaggcaga ggttgcttct ccatgtggct
     1501 tgcagaatct gcttgttggc tttaaaaaca ccctctcaca ctacaacctt agtctttaaa
     1561 ggaagattcg atgtgcttgt ccttgggcgc cttctatgaa cctctcttaa ggaactgact
     1621 cctttttccc tgttgtatgg caagtcactg tctcagccaa ttctgttaaa aatcttcctt
     1681 tgaaaataaa gagcctcatt acaaaattga gtttacaggg gtgttctgtg atggcatctg
     1741 ctaaaaactc taaggctgct agtgacattc tataggggga gcatttacga catatgactg
     1801 tgctcacctc tgaggcatat agactacaat tcaaaccaca cacatattat cacggtctct
     1861 gcatgagtaa agtgttaaaa tagctaaaac tctagaatgg tagcattttc tccagcctta
     1921 tgtcctctta tatttacaca gaaactcaag aaaaactttg tcatatgact taaattgtta
     1981 cacatcctat acttttatta gtgggtttct atatcttaac ttatgataca agtctcaaaa
     2041 tggtatttag tttcttaaga tatttatgct gcacaccatt tcttcccccc ccccccccgg
     2101 cccccagccc tctaaacttt gctccttttt ctagaaaagg aaaatcagag ttagagaagt
     2161 gggtttcagc tccttgaatc tggccataga atatggccat gaggtaaaac ctgagcgtag
     2221 gtggcctgtg tccccatgac tgtgaccacc tgccatgtct aacacaatgg tttctcctta
     2281 tgcttgtggg cctgagtacc agagactttc cacaaagatc tctggccagg cctggtgcga
     2341 gggttccagt aaagggaatc gaatgtgggc agggagggga caaatttatt gtaaccaaat
     2401 aagaaggctc atccttaatg atattttaaa gcctcaggtc actcaaacca ggtcactcaa
     2461 gaatggtgtt tgtgcatggt gctaaaccca aagctaatga aatactaacc tgaactattt
     2521 ctagtctttt aatttttcct attataacct gagctcccga ccaaactgga atatcccaaa
     2581 gcccacgcat agtttctgaa ctctggatag ctgtcagcaa ttcctccacc ttgaaaatta
     2641 tccattgatc tagctgctac agtcatataa ttaacaatgt tttactgggt gggggcagtg
     2701 tgttggctct gagaggctca gctatgttat agatccagtg ccttgaacta tgggtttcta
     2761 gtaaatcttg acattggttt caaaaactgg gaaaagggtt ttacttgagc tataggacca
     2821 tattcgtagc tacagcacct agttgtgagc actgtagaat tttacagaga gaagcttaac
     2881 aatggtttgt ttgtaccctc caacatttat actgaaggaa tacttgaaga aaagaaattt
     2941 atgcaataca gtgatgcttt tgaaatcaag attacacata taatgtattc agacctagtt
     3001 tcactgaata tggtgcacca aaccaaggtg aaaagaagtg ttagtctact gacttatagg
     3061 atgttttgtt cgtctttctc tgtagtactt agtgcctgac aaccaaagcc atcccattcc
     3121 ttctggcatt gtaagctggg aacccttggc caacatttgg ctcatctgac tatttgtcta
     3181 gaccaaggac gagcgaactt ttttagtaaa gacttacgaa gtaaatattt gagggtttgt
     3241 gttgtccata tggtatctgt cccccactac tcagctgttc cataatagca taaatgtagc
     3301 catggacaat atgtaaacaa acaatgaatg tacatcagca gttattaaaa acaaacaaaa
     3361 aacaaaaaat agtaaccaat ctatgtctgt actttgccaa gctctggtct aagctctttt
     3421 cacttcacta tgcaactgat ttttcttttt tcttgggcac tggatagcta aaaagtaaaa
     3481 cattgacgat tcttggtttg tgacaaatca gatacttgat atttacatta agatcatttt
     3541 gcttatatga gaaataaatg tatttgtttt gagtttattc tcagagtcca actgtgtctc
     3601 tttgtaaagc agtgtttctt ttacagatac cactaagcat gctggaagaa tttctccagt
     3661 ctcatgcacc acgttgataa taattttggg agctatctct catgcagttg actaacacac
     3721 agatctctca ggtctgacag ctgagtttaa atgcttgctt accctgtgct acaatacttt
     3781 cgttacaaaa aatcccttga aaactaataa agtaagtttt ttttt
//
