LOCUS       NM_025391               3036 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus NIP7, nucleolar pre-rRNA processing protein (Nip7),
            transcript variant 1, mRNA.
ACCESSION   NM_025391
VERSION     NM_025391.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3036)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK003739.1, AK014290.1 and AC123868.4.
            
            On Sep 3, 2009 this sequence version replaced NM_025391.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003739.1, SRR7345562.3329135.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                AK003739.1         1-41
            42-1348             AK014290.1         1-1307
            1349-3036           AC123868.4         83406-85093
FEATURES             Location/Qualifiers
     source          1..3036
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 53.57 cM"
     gene            1..3036
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /note="NIP7, nucleolar pre-rRNA processing protein"
                     /db_xref="GeneID:66164"
                     /db_xref="MGI:MGI:1913414"
     exon            1..114
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..601
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /note="isoform 1 is encoded by transcript variant 1; 60S
                     ribosome subunit biogenesis protein NIP7 homolog; kDa93;
                     nuclear import 7 homolog; nucleolar pre-rRNA processing
                     protein NIP7"
                     /codon_start=1
                     /product="60S ribosome subunit biogenesis protein NIP7
                     homolog isoform 1"
                     /protein_id="NP_079667.2"
                     /db_xref="CCDS:CCDS22644.1"
                     /db_xref="GeneID:66164"
                     /db_xref="MGI:MGI:1913414"
                     /translation="MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRV
                     YYVSEMMLKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPG
                     AEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMA
                     IVVFHQADIGEYVRHEETLT"
     exon            115..201
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /inference="alignment:Splign:2.1.0"
     exon            202..340
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /inference="alignment:Splign:2.1.0"
     exon            341..481
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /inference="alignment:Splign:2.1.0"
     exon            482..3036
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1116..1121
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /note="hexamer: AATAAA"
     polyA_site      1135
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /note="major polyA site"
     regulatory      3012..3017
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
                     /note="hexamer: ATTAAA"
     polyA_site      3036
                     /gene="Nip7"
                     /gene_synonym="1110017C15Rik; 6330509M23Rik; PEachy"
ORIGIN      
        1 gacttccgct tccggctctc caggcacgag gattcccggg agccaagcaa gcggcaagat
       61 gaggcccttg actgaagaag agacccgggt catgtttgag aagatcgcga agtacatcgg
      121 agagaacctt caactcctag tggacagacc cgacggcacg tactgtttcc ggctgcacaa
      181 cgaccgagtg tactatgtga gtgagatgat gctgaagctg gccgccaaca tctccggaga
      241 caagctcgtg tcgctgggga cgtgttttgg gaagtttacc aagacccaca agttccgctt
      301 gcacgtgaca gctctggatt acctggcccc ctatgccaag tataaagtgt gggtaaagcc
      361 gggagcagag cagtccttct tgtatggaaa ccatgtgttg aaatccggtc tgggtcgaat
      421 tactgagaac acatctcagt accagggagt ggttgtctat tccatggcgg acattcctct
      481 gggttttggg gtggcagcaa agtctaccca agactgccga aaagtggacc ccatggcaat
      541 tgtggtgttc caccaagcag acattgggga gtacgtacgc catgaagaga cactgactta
      601 ggacggtcat tccaagaaca ttttgctgtg tgagaggact tagctttgtt tcctgtgtgc
      661 ggccatcaga ttaaatctgg acaacactga gatacgcaac ttgggttctt atcaacagaa
      721 atggcgtgaa aacagggtct ctggccctct agagtcaaaa gcaggtggat cacaagtata
      781 aggccagctc aggctacttg gagagttcaa ggctagcctg ggctacatag tgagccttgt
      841 ctcaaaaatc taaaacagac aaaccagaac ctgagagtgt tttgtgtgag taaatagagt
      901 gtttctgttt tgtgtctgcg tcgtctttgt ttggatcaga agacttgctc tgagtgatgg
      961 tttctaagtt acttcactga ggacaggagc catcttactg ttatctgtga taacactgtt
     1021 ttccaggctc atgatagcac agtggacttt ctattgtgtg ttaatgttaa aggtagaaac
     1081 ggccatatga gcctctggtt ttacatatgg aatttaataa attttaatgg ttttatattt
     1141 gttatttcat atgtgtgagt gttttgttgg catgtacgta tgtgcactgc ttatgtgcct
     1201 ggtgcctaag gaagtcaagg tgatttcaga cctggaacta gagttactgg ttgtgagcca
     1261 ccgtataggt gccagaaatt aaactcaggt cctctgcagg gacagcagtg gtcttaacca
     1321 ctaagctatc ctaataaatt taataggtgc attttggcta tttttcttgg tgttaagtgg
     1381 ggtatagcgt ggaagcgtct gtattcaagc ctcagttctg ccccttgcca gctgtggtgg
     1441 tggacaagtt ctctgcttag agaggcttca ttttcttcct ttgttaaaag aaaaaaccca
     1501 tgaccctgcc gtatggtggt gcatatcttt agttacagca cgggggcttg agggtgaggc
     1561 aaaggcagat ggagctctat aggttcaagg ccagcctggt ctacataagg agatcctggc
     1621 cagtcttaaa cccaaaaccc acaaaactga aaaaacacct ccagtcatca gtgtaacagt
     1681 gatattcaga attaaaaata gcagttgtag gggctggtga gatggctcag tgggtaagag
     1741 cacccgactg ctcttccaaa ggtccggagt tcaaacccca gcaaccacat ggtggctcac
     1801 aaccatccgt aacaagatct gactccctct tctggagtgt ctgaagacag ctacagtgta
     1861 cttacttaca tataataaat aaataaaaaa tagcagttgt aaagcatcct gcatgggata
     1921 gagttatcct gtctcaaaac aggaaattgt tcgtgcgtgt ctgtgtgagt atatcctgct
     1981 tgggtagcgg tatcctcaga gggcagaaaa cacttgggat tccttggagc ctgaggtaag
     2041 gacagttgtg agctggccat tgttggtgtt gggaaccaaa cttcagtcct ctaaaagaga
     2101 atgttctttc tgaactgctg agccatcttc cctgtctgtg ttaaaatgat tttgttactt
     2161 tttttttttt ttaattgaaa caagttctga ctatgtatct ctgcttagaa tgtacccagg
     2221 ctggcctcaa actcaaggat ccattgattc tgaagtgctg agattaaatg ggtatactac
     2281 cataccaggc tcaattcccc cacctccctt ttttttttgt ttttgtttgt tttttttgtt
     2341 tgttttgttt ttgtttgttc ttttgagaca gggtttctct gtagccctga ctgtcctgga
     2401 actcattctg tagaccaggc tggcctcaaa ctcagagatc tgtttgcctc caaaatactg
     2461 gccttaaaaa atgtgcccca ccatgcctaa cttcagaaca atttcttttt cttttttttt
     2521 gagacagggt ttctctgtat agccctggca gtcctggaac tcactttgta gaccaggctg
     2581 gcctcgaact cagaaatcca cctgcctctg cctcccgagt gctgggatta aaggcatgca
     2641 ccaccacacc cggcagaaca gtttcttaag atatgatcag gttatgtcag ttttaggggg
     2701 catttttatt ttttgagaca tttgtcacat tatatctaag ttggtctgaa atgctatggg
     2761 acccaggctg tcttagcctc tcaggtaatg gtattatagg tctgtcgcca caccagtttc
     2821 caatggtaac atcttttaaa taaagtaaaa tatttccaac cgttgaaggg cactacaggc
     2881 caagaagata gctcagtgga cagcctggta gggtggatca gccatgtgcc accaagcctg
     2941 atgctgtgtt caatccctgg gacaaggttg aaggtgggga cattgctgac ctttgtagtc
     3001 ctctacaatg gattaaaatt ttttaaactc caaaaa
//
