LOCUS       NM_001033189            5226 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus NHS like 3 (Nhsl3), transcript variant 1, mRNA.
ACCESSION   NM_001033189 XM_110498 XM_622905
VERSION     NM_001033189.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5226)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606977.28.
            
            On Jan 6, 2023 this sequence version replaced NM_001033189.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (a).
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK154932.1, SRR13948564.1868580.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-362               AL606977.28        194535-194896       c
            363-533             AL606977.28        172257-172427       c
            534-589             AL606977.28        172121-172176       c
            590-710             AL606977.28        171766-171886       c
            711-824             AL606977.28        170812-170925       c
            825-3326            AL606977.28        168229-170730       c
            3327-5226           AL606977.28        165992-167891       c
FEATURES             Location/Qualifiers
     source          1..5226
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 63.11 cM"
     gene            1..5226
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /note="NHS like 3"
                     /db_xref="GeneID:97130"
                     /db_xref="MGI:MGI:2140651"
     exon            1..362
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..3349
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /note="isoform a is encoded by transcript variant 1;
                     NHS-like protein 3"
                     /codon_start=1
                     /product="NHS-like protein 3 isoform a"
                     /protein_id="NP_001028361.1"
                     /db_xref="CCDS:CCDS18686.1"
                     /db_xref="GeneID:97130"
                     /db_xref="MGI:MGI:2140651"
                     /translation="MAARAPPAAPAADEPGSPGGPPRRKKSRSGLRRAFSWLRGKRRK
                     KKAAGAEGAESTASRAKKADDKAKRAKGKSRGSAKAESDNRQGAGPSQGPGSVGDELQ
                     DNVFFPSGRPPHLEELHTQAQEGLRSLQHQERQKLSKGGWDHGDTQSIQSSQTGPDED
                     TISIYSQKSYMTESSTAEDALSVRSEMIQRRGSTFRPHDSFPKSGKSGRRRRERRSTV
                     LGLPQHVQKELGLRNNREAPGTPQPPGSRDAVRIPTVDGRPGLALGTGVRVSLQALEA
                     ETEAGTDAEAVIQRHIDRVYHDDTLVGRSTGARPPPLTRPMSLAVPGLTGGAGSPEPL
                     SPAMSISPQATYLSKLIPHAVLPPTVDVVALGRSSLRTLSRCSLLSASPASVRSLGRF
                     SSASSPRPRSRNASSSSDNWSHSQSSETIVSDGSTLSSKGGSEGQPEGSVASNNVAPP
                     PPGGSGRGSPSGGSTAETSDTASIRSSGQLSGRSVSLRKMKRPPPPPRRTYSLHQRGS
                     AVPDGPLGLPPKPERKQQPQLPRPPTAGGSSGVGAVSCPPSSAGTWGSGLSPGGSRRP
                     PRSPERTLSPSSGYSSQSGTPTLPPKGLAVAPASPGKAQPPKPDRVTSLRSPGASVSS
                     SLTSLCSSSSDPTPLDRSGPQMSTPLSDRFVIPPHPKVPAPFSPPPSKSKSSNQAAPV
                     LAAPAVAPGQVSTIDTSPASPSMPQTTLTPAQESPVASKDESPPPSPPPSYHPPPPPT
                     KKPEVLEEAPPPPEAAVEILPDPSWPPPPPPAPEEQDLSMADFPPPEEVFFNAGPELG
                     PLESCSSEAAVPPAASLSQTPPPAPPPSSGSEPLARLPQKDSVGKHSGAPREDSGTPL
                     VTPSLLQMVRLRSVGASTGIPNPSPGSSAPQKPLRRALSGRASPVTAPSSGLHAAVRL
                     KASSLAASESPASALPTGIPEAEPRSPQSPASKASFIFSKGTKKLQLERPVSPEAQAD
                     LQRNLVAELRSISEHRPPPQAQKKPSKAPPPVARKPSVGVPPPSPSLPRTESLTAPST
                     NGLPHAEDRTNGELAENGGVQLAATEKMGSPGSDPQKKLV"
     exon            363..533
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /inference="alignment:Splign:2.1.0"
     exon            534..589
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /inference="alignment:Splign:2.1.0"
     exon            590..710
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /inference="alignment:Splign:2.1.0"
     exon            711..824
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /inference="alignment:Splign:2.1.0"
     exon            825..3326
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /inference="alignment:Splign:2.1.0"
     exon            3327..5226
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5194..5199
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /note="hexamer: ATTAAA"
     polyA_site      5226
                     /gene="Nhsl3"
                     /gene_synonym="C77080; mKIAA1522"
                     /note="major polyA site"
ORIGIN      
        1 agcgatcgct cagcctccgc cgcccaaact tttttctccg ggcgcgtctc cggcggcggc
       61 cgcccccgcg catgggcgcc gcgctgcagg gggcctgacc cccgccgcgg gcaccgcgcc
      121 tccccagccc cgcgccatgg cggcccgcgc gccccccgcc gcacctgcgg ccgacgagcc
      181 tgggagcccc ggcggccccc cgcgcaggaa gaagtcccgc tccggcctcc gccgtgcctt
      241 cagctggctg aggggcaaac ggcgcaagaa gaaggcggcc ggggccgagg gcgccgagtc
      301 cacagcctcg cgggctaaga aagcggacga caaggccaag cgggccaagg gcaaaagccg
      361 aggctctgct aaggccgaga gtgacaaccg tcagggcgca gggcccagcc aggggccagg
      421 atctgtagga gatgaacttc aggacaacgt tttcttcccc agtgggagac ctcctcatct
      481 ggaagagctg cacacacagg cccaggaggg gctccgctcc ctccagcacc aagaaagaca
      541 gaagctgagc aagggcggct gggaccatgg agacacccag agcatccagt cctcccagac
      601 ggggccggat gaagatacca tctccatcta cagccagaag tcatacatga cggagagctc
      661 caccgcggag gatgcgctct ccgtccgctc ggagatgatt cagcgcagag gctccacctt
      721 cagaccccat gactcatttc ccaaatctgg gaagtcagga aggcgacgga gggagcgaag
      781 gagcacggtg ctggggctgc ctcagcacgt gcagaaggag ctcggcctgc ggaacaaccg
      841 tgaggcaccg ggcactccac agcctcctgg ttcacgggac gctgtccgca tccccacggt
      901 ggatggtcgc cccggtctgg ccttagggac aggggtccga gtgtccctgc aggctctgga
      961 agcagaaaca gaggccggca cagatgcaga ggctgtcatc cagcgccaca tcgaccgtgt
     1021 ttaccacgat gacacgcttg ttggccgatc cacgggagcc cggccaccgc cactgacgag
     1081 gccaatgtct ctcgcagtgc ctggactgac aggaggagca ggatctccag agccactgag
     1141 cccagccatg tcaatctcac cccaggccac ctacttgtcg aagctgatcc cgcacgccgt
     1201 gctgccgccc accgtggatg tggtggccct gggccgcagc agcctgcgca ctctgagccg
     1261 ttgcagcctg ctctctgcca gcccagcttc ggttcgctcc ctgggccgct tctcctcggc
     1321 ttccagtcca cggccccgca gccgcaacgc ttcctcgtcc agtgacaact ggagccactc
     1381 tcagtcctcc gagaccattg tgtctgatgg ttccactctt tcctctaagg ggggctctga
     1441 gggccagcca gaaggctctg tagctagcaa taatgtggcg ccccctcctc caggcggtag
     1501 tgggcggggc tcccccagcg ggggtagcac tgcggagacc tcagacacgg ccagcatccg
     1561 aagcagtggg cagctgtctg gcaggagtgt gtccctgcgt aagatgaaac ggcctccccc
     1621 gcctccccgc cggacctact ccctccatca gcgcggctcc gcagtgcctg atgggccctt
     1681 agggttgccg cccaaacctg agcgaaagca gcagccacag ctgcctcggc cgcccactgc
     1741 gggtggctct tcaggggtgg gggcagtatc ttgtccaccc agctcagcag gcacctgggg
     1801 ctctggcttg tccccaggtg gctccaggcg tcccccacgt tccccagaac ggacactttc
     1861 accttcaagt ggctactcga gccagagcgg taccccaact ctccctccca agggtctggc
     1921 agttgcccct gcttccccag gcaaggctca gccccccaaa ccagatcgag tgacatccct
     1981 tcgatctcct ggggcctctg tatcctcttc ccttacatct ctgtgttcct cttcttcaga
     2041 ccctactcct ttagaccgct ctggcccaca aatgtctacc cccttgagtg acaggttcgt
     2101 catacctcct catcccaagg tgcctgctcc tttctctcca ccaccttcca agtccaagag
     2161 ctcgaaccaa gctgctcctg ttctggctgc ccctgctgtg gctcctgggc aggtgtccac
     2221 catcgacacc agtcctgcat ccccttccat gccccagaca accttgactc cagcccagga
     2281 gtctcctgtt gcctccaaag atgagtcacc cccaccatcc ccacccccat cttaccatcc
     2341 acccccacca cctactaaga agccggaggt gctggaggag gccccacctc ctccggaagc
     2401 tgctgtggag atccttccag atcccagctg gccgccgcca ccaccacctg cacctgagga
     2461 acaggacctg tcgatggctg acttcccccc tcctgaggag gtcttcttca atgcaggccc
     2521 tgagcttggc cctctggagt cctgcagctc tgaggctgcc gtccccccag ctgctagctt
     2581 gtcccagact cctccgccag ctccacctcc tagttctgga tcagaacctc tggccaggct
     2641 cccacagaag gactcagtgg gcaagcacag cggggctccc agggaggatt cgggcacgcc
     2701 tctggtcaca ccctcgctcc tgcagatggt ccggcttcgc tctgtgggtg cttccacagg
     2761 gattccgaac ccttctccgg gttcatcggc ccctcagaag cctctgcgaa gagccctgtc
     2821 tgggcgcgcc agcccagtga ctgctccctc ctctgggctc catgctgccg tccgactcaa
     2881 ggcctctagc ctggctgcca gtgagagtcc tgcgagtgct ctgcccactg gaatacccga
     2941 ggcagagcca cggtcgccac agtctcctgc ctccaaggcc agcttcatct tctccaaggg
     3001 caccaaaaaa ctgcagctgg agaggcccgt gtcccccgag gcccaggctg acctccagcg
     3061 gaatctggtg gctgaacttc ggagcatttc agagcatcgg ccacctcccc aggcccagaa
     3121 gaagccttcc aaggctcccc caccagtggc ccgcaaaccc tcagtgggag tccctcctcc
     3181 gtcccccagt cttcccagga cggagtctct tactgctcca tccaccaatg ggctccctca
     3241 cgctgaggac aggactaacg gggagctggc ggagaatgga ggtgtgcagc tggctgctac
     3301 agagaagatg ggctcccctg gttcagatcc acagaagaaa ctggtctgac cgtcatcact
     3361 caactggccc tgctgaccca tcccagggat acagtctctc agggacccga gcagctccaa
     3421 ggaacagagg atttggcaga cacaacctaa gacaggatgc ctgcggcctt aatctccaca
     3481 gcctccatgt ttatgcaagc ctggtgttgc ccatcctcca agtgacccct cccctcatgc
     3541 ctttgcctga aaggattcac ctccagcagc ccttcagcct cggccttagc ctccacttga
     3601 agaaggtagc tggagggagg gggtggctgt gccccacccc ggcccccaag gccacagcgg
     3661 tgggagggga gcagaatacg cgtttatttt gtttcatgtc tggaatcatg tttattgcaa
     3721 tctagaatca aagcactttg caaagtggct gcatgtccat cctccagggc tcacgaaccc
     3781 acattccaag agcctgttta cacggtggta gcgccagtgc ttggtagcca gcccccagct
     3841 gggaccagtc tgtccactct gccagtccag tccactcctt tccttagttc tcggagatgg
     3901 gcaagtctct catgcccaca ggctccccag gctgctggca ggagtggggc tgtggaattc
     3961 caaagcacaa aaggtgcagt cgaggctagc cttcctgtgc ctcaactcac caccaaccac
     4021 tctcctgcct tccagttctg tcaggtgctc cttctagggg actcatggtg aggagagaga
     4081 agccagagga ggcctgtggg cactacacta agaaaccaaa aaccagacta gggagccatc
     4141 tgggatgttg gcatgttggg tacctgtcct gtgacacttg attgtgcttg ggtggatggg
     4201 cacagcctca gagccaggag ctcatgggat gtgtccattt cggcttggca ggaaatcctg
     4261 ccaaggtgtg gggagggtct ggcagggact tcctgggcag tgggcccagg cctattcctc
     4321 agaatctttc tctgacctgt ctccactctc cggtgcatgt cctttctgca gctgcctttc
     4381 tgccaggtgg agggagctga gggtttgtgg ccaggatggg gagccaaagg cttatgttac
     4441 taccccaggc tcttctctag aagaggggat aagctgtgat ctttccagca ggccggtggc
     4501 tatccccaga gagcagcctc tgctttctct tcctagaatc tcatgacttg taccacctcg
     4561 aggtgagccg gagttcctgt aggctccatg gctgtgcctc cttcagggcc accctttgag
     4621 tcttttcaac gggggctcca gcctggcaag agagcctgcc agtagcttct ccactaccaa
     4681 gacgggagca gcacgctacc ccattactga ccttgctgtc aagagctggg gagatggggt
     4741 ggagtccagg ccccctaagc cctcctgttc gggctgcttg tgttctctgt ctttccctgg
     4801 tccgtgtgtg atggggagct gctgctggga gggaggacaa tcaaagtaag cactgttctg
     4861 ccccacgatg caggatgcag ggtcgccagg gtcgctggag ctcttgccct ggcttgggtt
     4921 cttctctgtg tttccccacc gggtgggcca cagtacaaag aaggaaggag agtctacaag
     4981 agacatctct gtcctctggg gtaaatgagc ttgaccttgt gcaaatggag agaccaaaag
     5041 cctctgattt ttaatttgca taaaaatatt agaagagaga aatatatatc tatatttcct
     5101 tactttgagt ctttgatatg tctctataaa caatcctttc cctatgcctc ctcctctgaa
     5161 gcttgagtga gacacatgac aaagctgtgt ttcattaaaa ggtattaatt aaatgattga
     5221 aacttg
//
