LOCUS       NM_133921               3670 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus nuclear transcription factor, X-box binding-like 1
            (Nfxl1), transcript variant 1, mRNA.
ACCESSION   NM_133921 NM_177007 XM_001052091 XM_001052092 XM_001052093
VERSION     NM_133921.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3670)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3670)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   3  (bases 1 to 3670)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   4  (bases 1 to 3670)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC161529.4.
            
            On Jan 18, 2018 this sequence version replaced NM_133921.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422601.344770.1,
                                           SRR17784649.158323.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-57                AC161529.4         5156-5212
            58-312              AC161529.4         5533-5787
            313-486             AC161529.4         8456-8629
            487-596             AC161529.4         12049-12158
            597-727             AC161529.4         14379-14509
            728-906             AC161529.4         23769-23947
            907-1068            AC161529.4         24148-24309
            1069-1169           AC161529.4         24407-24507
            1170-1284           AC161529.4         25081-25195
            1285-1409           AC161529.4         26527-26651
            1410-1532           AC161529.4         27313-27435
            1533-1623           AC161529.4         31666-31756
            1624-1744           AC161529.4         35297-35417
            1745-1904           AC161529.4         35630-35789
            1905-1996           AC161529.4         36551-36642
            1997-2018           AC161529.4         40133-40154
            2019-2159           AC161529.4         40574-40714
            2160-2326           AC161529.4         41126-41292
            2327-2396           AC161529.4         42584-42653
            2397-2501           AC161529.4         46502-46606
            2502-2588           AC161529.4         47689-47775
            2589-2642           AC161529.4         48536-48589
            2643-3670           AC161529.4         50470-51497
FEATURES             Location/Qualifiers
     source          1..3670
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 38.44 cM"
     gene            1..3670
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /note="nuclear transcription factor, X-box binding-like 1"
                     /db_xref="GeneID:100978"
                     /db_xref="MGI:MGI:1923646"
     exon            1..57
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            58..312
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            313..486
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            487..596
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            597..727
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            728..906
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1068
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1169
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1284
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1409
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1532
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1623
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1624..1744
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1745..1904
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1905..1996
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            1997..2018
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            2019..2159
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            2160..2326
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            2327..2396
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            2397..2501
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            2502..2588
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            2589..2642
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
     exon            2643..3670
                     /gene="Nfxl1"
                     /gene_synonym="1700012H24Rik; D430033A06Rik; DNABF; GCF;
                     Gm1058; TCF9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttttcggt gcggtccact tcagcagttg gttcccggcc gcggccgcgg ccgcacggga
       61 tggacgctcc ctggcgccag gtggccgctg gccgaggccg agcccgagga cgggccaccg
      121 cagtgcccct ctcaggaaat ggagtccctt ttggtggcgc tggaggaggg cgagccaaag
      181 ggtctggggg cgcggtgtct tcgggccccg gccccggggg agcagcagct ctggcccctg
      241 cgggtcgcgg gcagcgctca gctggaggcg aagccccgca gcccccgggg gcccggggtg
      301 aggatggctc agaactaatg tctcagaaga aatttgagga gatcaagaag tccaatcaag
      361 ctgcagccag aaagctgttg gaggagcact gcagctcttc ctctgaagaa gaaggggatg
      421 aagacttgga aggaaaacag gggaaaattg ttgctaatac attcacaaca tacactactc
      481 acacagatgg agatatacat gaattagagc gaacaaaaca gtatctgaat gaggctttcc
      541 aagcaggggc tatgacgtgc ctaatttgta ttgcttcagt gaagagaaac caggcagttt
      601 ggagctgttc aggatgtttc tgtatattcc atatgccctg tattcagaag tgggctaaag
      661 acagccagtt tcttgtgtct tctgtgacag acgatgattt tggaaagaaa gattatccct
      721 ggccatgtcc aaaatgtaga tttgaataca aaagatcaga aacacctagt agatattatt
      781 gctactgtgg aaaagtagaa gatccacctt tagatccgtg gcttgtacct cattcgtgtg
      841 gccaagtatg tgagagagaa tttaaacctt cttgtggtca taaatgcttg ctgctctgcc
      901 atccaggtcc ctgccctcct tgtccaaaga tggtcacaac cacttgttac tgtaagaaag
      961 ccaagcctat ccctcgcagg tgcagtgcca agcagtggtc ctgtcagctg ccatgtgggc
     1021 gaaagctgct ttgtggacat cataagtgtg aaaatccttg ccatgcagga aactgtcagc
     1081 cttgtccaag agttagtaga caaaaatgtg tatgtggcaa aaaagtagca gaaagaagtt
     1141 gtgcaagccc agtgtggcat tgtgatcaag tatgtggaaa gacactgcca tgtggtaatc
     1201 atacatgtga gcaagtttgt catgttggtg cttgtggaga gtgtcctcga tctgggaaga
     1261 ggtcctgtcc atgtcagaaa tcaaagtttt ctttgccttg tacagaagat gtaccaactt
     1321 gtggagacag ctgtgacaaa atacttgaat gtggaatcca taggtgttca cagcgttgcc
     1381 accgaggtcc ttgtgaaaca tgcagacaag aagtggaaaa acagtgtcgt tgtggaaagc
     1441 acacaaagcg aatgccttgt cacaagcctt acctttgtga aacaaagtgt gttaaaatgc
     1501 gggactgtca aaagcatcag tgtaggagaa agtgttgccc tggaaactgt ccaccttgtg
     1561 atcaaaattg tggacggact ttaggatgta gaaaccataa gtgtccgtct gtctgccata
     1621 gaggcagttg ctatccatgt ccagaaacgg tagatgtgaa gtgcaattgt ggtaatgcaa
     1681 aggtgacagt accctgtggc cgagagcgga ccacaaggcc acctaagtgc aaagagctgt
     1741 gcagtcgacc accaacatgt catcatgcaa gtcaagaaaa acaccgctgt cactttggcc
     1801 catgtccacc gtgccatcag ccttgccaaa aagttctgga gaagtgtggg cacttgtgtc
     1861 ctgagtcatg ccatgatcaa gcattagtaa agcagactgg caggcatcag ccatcaggcc
     1921 cttgggagca gccagctgag cctgcattca tccagacggc cctgccttgc cctccgtgtc
     1981 aagttcccat ccctgtggaa tgtctgggga agcatgaggt gagcccacta ccatgccatg
     2041 ctgtaggacc ctattcttgc aagagacttt gtggaagaat gttgcgctgt cagaatcata
     2101 catgtatgaa agagtgccac aaagttactg aagttgatag ctctactggc aaaaataagg
     2161 ctggcccaga atgctttcac tgtgaagaag ggtgctctaa gtcacggcct gcgggttgtc
     2221 ctcacccttg tgttttgcca tgtcaccctg gaaaatgccc tccttgtgtc cagatgctta
     2281 gaataaaatg tcactgcaag atcacaagcc tgtatgtgga atgtagaaaa ataaccacag
     2341 ctgatgtaag cgaaaagaac ctcctcagtt gctgcaaaaa ccagtgcccc aaagagcttc
     2401 cttgtggcca cagatgcaaa gagatgtgcc atcctggtga atgccccttt aattgcaacc
     2461 agaaggtaaa acttagatgc ccttgtaaaa gaataaaacg ggagttgcct tgcaataaag
     2521 tacgtgaaaa tcaggtttca gttgaatgtg atgcaacgtg caaggagatg aagcggaaag
     2581 cgtctgaggt taaagaagca gaagccaacg ctgccctgga agaagaaaag cgaaggcagc
     2641 aggctgaact ggaggctttt gaaaacagac tgaagggccg tcggaagaag agcaggaaac
     2701 gcgatgaagt ggccgtggag ctctcgcctt ggcagaagta taagtcctac ctccttcccg
     2761 tgtgtgcagt tgtggtggca gtgcttatgt ggtacatctt ccatggtgtg gattaatgat
     2821 cctttaaatc tcctgacata cctcagactg gagttatata aatgttcaat ttcagacgtt
     2881 aggaaacatg cactgtagca tatgacccac ttcacattcc tctctgtgcc cttgtctggc
     2941 tgtaggtagg acagaatgct tagtgtcatc tgagtcagta cagtccccag cagtgagacg
     3001 ctgtctagag tcagcacgac tgcagctgta gagcaggcag cattgccctg tgtgtatgaa
     3061 gtccgtcttt ctcatcagat atgtccatgt tcaaagacaa aactgagcca tatgtgcagc
     3121 agcaggggta tttctctggt cacttggtac ttttctcgat catgtaactt tctacttttt
     3181 taaagaaatg attctataaa ggaatcttaa attctaacag gaagctttgt aattagattt
     3241 caggttagtt tatcagagag gaatttttat tggtcattga agcaaatttt acactgcata
     3301 ttcttgagaa aatataaaca agggccagac taggttcctc ctaggaggtt ggtttgtttc
     3361 tttttttggt gcaagaagct ttaactgatg ttggcatgtt ttgtaaaact tgtgtgtatc
     3421 ttttttatga taataataaa ggaaaactaa tatttatgag caatatgtgc cgagcacagg
     3481 gctcgggggc tttatgtact tgattccatt ttttttactg taattcttga tatgttatag
     3541 ctgaaaataa tccgttttgt gaaatcaaac tgatagagaa ataataagcc aaattacata
     3601 gatttgtaag tcatttaaag tagttttgca atttaatttt atgattgttt tcattaaaaa
     3661 ttttcatacc
//
