LOCUS       XM_036153809            3726 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus nuclear factor I/X (Nfix), transcript
            variant X25, mRNA.
ACCESSION   XM_036153809
VERSION     XM_036153809.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3726
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..3726
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="nuclear factor I/X; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 3 ESTs, 1430 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 36 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
     CDS             304..1485
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /codon_start=1
                     /product="nuclear factor 1 X-type isoform X19"
                     /protein_id="XP_036009702.1"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
                     /translation="MSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDF
                     VLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER
                     LYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPN
                     GHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRS
                     ITSPPSTSTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLK
                     KSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSP
                     YFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTAT
                     F"
ORIGIN      
        1 tttttttttt tttttcgtgc gggatacagg gcttcacccg tcctacccta tcgcaggccc
       61 ttttccttct ctcaccttta gtcagttttt ctgttcttct ttagagaaac ttgtgaagct
      121 ggtctgtggg gtccctccct cttcctgggc cctgggccac tgtggagtga cactgtcaaa
      181 gccaaccagg atgagttcca cccgtttatc gaggcgctgc tgcctcacgt ccgagccttc
      241 tcctacacct ggttcaacct gcaggcgcgg aagcgcaagt acttcaagaa gcacgagaag
      301 cggatgtcaa aggacgagga gcgcgcagtg aaggacgagc tgctgggcga gaagcctgag
      361 atcaagcaga agtgggcatc ccggctgttg gccaagctgc gcaaagacat ccggcccgag
      421 ttccgcgagg actttgtgct aaccatcacg ggcaagaagc ccccctgctg cgtgctttcc
      481 aaccccgacc agaagggcaa gatccggcgg attgactgcc tgcgccaggc tgacaaggtg
      541 tggcggctgg acctggtcat ggtgattttg tttaaaggga tccctttgga aagtactgat
      601 ggggagcggc tctacaagtc gccccagtgc tcgaaccccg gcctgtgtgt ccagccacat
      661 cacattggag tcacaatcaa agaactggac ctttatctgg cttactttgt ccacactccg
      721 gaatccggac aatcagatag ttcaaaccag caaggagatg cggacatcaa accactgccc
      781 aacgggcact taagtttcca ggactgcttt gtgacgtctg gggtctggaa tgtgacagag
      841 ctggtgagag tatcacagac tccagttgcg actgcatcag ggcccaactt ctcactggcg
      901 gacctggaga gccccagcta ctacaacata aatcaagtga ccctgggaag gcggtccatc
      961 acctcccctc cttccaccag caccaagcgc cccaagtcca tcgacgacag tgagatggag
     1021 agtccagtag atgatgtgtt ctatcctggg acaggccgct ctccggccgc tggcagcagc
     1081 cagtctagcg gatggcccaa tgacgtggat gcaggccctg cttctctaaa gaagtcagga
     1141 aagctggact tctgcagcgc cctctcctct cagggcagtt ccccacgcat ggctttcacc
     1201 caccacccgc tgcctgtgct tgctggagtc agaccaggga gcccccgggc cacggcatca
     1261 gcgctgcact tcccttccac gtccatcatc cagcagtcga gcccgtattt cacacaccca
     1321 accatccgct accaccacca ccatgggcag gactcgctga aggagtttgt gcagtttgtg
     1381 tgctctgacg gctcgggtca ggccaccgga cagcattcac aacgacaggc gcctcctctg
     1441 ccaaccggtt tgtcagcatc ggatcccggg acggcaactt tctgaacatc ccacagcagt
     1501 ctcagtcctg gttcctctga ttaagatcaa caaagaaaca actaaattta aaaaaggaaa
     1561 aaaaaaaaag aggttcctca aaatggggga gaagaaattt tgagacatgg aaatatcccc
     1621 cagcccagcc ccaccgaaaa gcaaaactta gacgtcgtca gccactcagc ccttccctcc
     1681 tccagccctg gtacccccgc gttccaaagc cgcccagttc tgggagtcct cggaaagggg
     1741 tctcagcgga gctgtacacc agcagccaag cagaaagaag catgctaagc ggactctgct
     1801 aagcagagga caaacagaaa gaaaggatgc aacaagactg ccttcctcct actcagcctg
     1861 gccttcccag gaaggagcag ccagctcact ggccggccac cctggcagtt cctggggacc
     1921 ccaccctccg ctggacttaa gcttcccaag gagcccagag gaacagctcg taacaatagt
     1981 agacattcga gctcccctcc ggacttcgtc tctttccctc accccacccc ccactcccca
     2041 acctctcttg cccttcctgg gagcctctgc tcaggcttct ggccccagct gctctggacc
     2101 aggctagggc gttcccgggt aggtaaggga tgcttcttag agctaactga attcagcctg
     2161 agtccagaat agagggtgtt ctgccacccc attttgaacc gcccgggcag ttctcgggct
     2221 ggacaccctc tgtacagcac acaggaaagt cagaatgctc tggactggac gcccagccca
     2281 gcataggcac cttcttccac gcccgcagga cgcaagggct gctgccctct gccacgcccc
     2341 tagtgaaggg agtcggcccc aggtcgcccc gcaccccagc cctgcatgca ggtgcccttg
     2401 ctccgcccct ctgccctgcc cctgcccttg ctgcacacag ccctccaggg gccggctgag
     2461 agtggagcag aaagggcccc cggagctgag cgaggaggac aaggcagcct ccacctgcgc
     2521 taggtaggcg tcctgctctc gagactttga gttcctgtgg agggtggggg gtgtcatcct
     2581 tttaaaagag tgttctggag ctttctggtc cccttccctt cccaccacgc cccgtggcca
     2641 cttctcccta gattttagct gtaatgtctt tcctctttat ttaggggtgg ggcagtcatt
     2701 gtttgggtct ttcgctgttt gcagttggga actcctctgt ttgagcaact tgggaacaat
     2761 ttcgtaacac accacaggaa gcagttctcc tcccagcccc ctcctccagt aagggatggc
     2821 ggaggcttgt ccagagggtc ttgagaagcc ccctgggagg gaggggaacg cgagcacgcc
     2881 agaccccctg cagggtgact gggcccctct ggcttgtctt tctgtgcctt agtcctcctt
     2941 ccctgcatct cccctcccag gcccgttctc aaggccatgc gcctctctcc ggtatgaaaa
     3001 cacaaagcac aggtcaggat cttccgaaag tcggtccaac attgcaccac gtgggggtgg
     3061 gttgtgggct ttatttattg agaatctagt tggtgaggct gcggccctga acaggagaat
     3121 ggccgctagc agggagctcg gggctgcgag gcggctgtcc ctgcgttctg tgtggaagtt
     3181 gagcgaagcc ctcccctgcg gcgtcgaggg ccaggccggg gtggacgtcc agcgggggga
     3241 ggcctccctg tgcgagggga gggagcccca gggtgggggg ccgggcgggc cgggcgtgac
     3301 gcgcggtcaa agtgcaatga tttttcagtt cggttggcta aacagggtca gagctaagag
     3361 ctagcgaaag agggtccctg cccggccgcg tgcgcctctt cggtcggtcg aggacagtcg
     3421 ggctgtgggc gctgtgggat tgcggggcac acgccccggg cgaggtcaga agctgcaggc
     3481 cagctgggcc ggggcccaag gtgcccgaga gaggtaccct cgggaggact ggggtggggg
     3541 tggtgctcct ttcccaagtg gtggtgtgag gggcaggcag gcagggacga tgagggcgac
     3601 agatgtgggg acgtgtttag gagaggaaac aacccacaaa aaaatatagg ggaaattaac
     3661 cttttttttt ttattgaacc aagtgcaatg catcagagag ttttcctatc tttgtatgtt
     3721 aagaga
//
