LOCUS       XM_036153802            3997 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus nuclear factor I/X (Nfix), transcript
            variant X18, mRNA.
ACCESSION   XM_036153802
VERSION     XM_036153802.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3997
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..3997
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="nuclear factor I/X; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 3 ESTs, 1447 long SRA reads, 4 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 52 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
     CDS             434..1756
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /codon_start=1
                     /product="nuclear factor 1 X-type isoform X13"
                     /protein_id="XP_036009695.1"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
                     /translation="MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKH
                     EKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPC
                     CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPG
                     LCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVT
                     SGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTKR
                     PKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
                     SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHH
                     HHGQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF"
ORIGIN      
        1 cccgccccgc ccgcccctcc ccgcgcccct cctcccgccc gcgccgcccg cccgctccct
       61 ctccccggag tgcgccgctt ccaaactttg tctaaacttt cactttcaca gcgcggcggc
      121 ggcggcggcg gcggcggtgg cgggcgaggg cgagcggccg agcggcggcg gcatggagta
      181 gacgcgcggc ggcggcggcg gcggcggcgg acgcgagagg cagcggcgag cgcggcggcg
      241 gcccggagcc cgcggggccg agcctgtgag cgcggagcgg cggcgggccg agcggggccg
      301 cgggccgggc gggcgccgcg cggcagaggc cggagcagcg gagccggagc ccgagcgcca
      361 gccagcgcga cgccgcctgc cgggcctgcc ctcgccgcgg ccggcctccg cgctcgcgcc
      421 cgggcgccca gcgatgtact ccccgtactg cctcacccag gatgagttcc acccgtttat
      481 cgaggcgctg ctgcctcacg tccgagcctt ctcctacacc tggttcaacc tgcaggcgcg
      541 gaagcgcaag tacttcaaga agcacgagaa gcggatgtca aaggacgagg agcgcgcagt
      601 gaaggacgag ctgctgggcg agaagcctga gatcaagcag aagtgggcat cccggctgtt
      661 ggccaagctg cgcaaagaca tccggcccga gttccgcgag gactttgtgc taaccatcac
      721 gggcaagaag cccccctgct gcgtgctttc caaccccgac cagaagggca agatccggcg
      781 gattgactgc ctgcgccagg ctgacaaggt gtggcggctg gacctggtca tggtgatttt
      841 gtttaaaggg atccctttgg aaagtactga tggggagcgg ctctacaagt cgccccagtg
      901 ctcgaacccc ggcctgtgtg tccagccaca tcacattgga gtcacaatca aagaactgga
      961 cctttatctg gcttactttg tccacactcc ggaatccgga caatcagata gttcaaacca
     1021 gcaaggagat gcggacatca aaccactgcc caacgggcac ttaagtttcc aggactgctt
     1081 tgtgacgtct ggggtctgga atgtgacaga gctggtgaga gtatcacaga ctccagttgc
     1141 gactgcatca gggcccaact tctcactggc ggacctggag agccccagct actacaacat
     1201 aaatcaagtg accctgggaa ggcggtccat cacctcccct ccttccacca gcaccaagcg
     1261 ccccaagtcc atcgacgaca gtgagatgga gagtccagta gatgatgtgt tctatcctgg
     1321 gacaggccgc tctccggccg ctggcagcag ccagtctagc ggatggccca atgacgtgga
     1381 tgcaggccct gcttctctaa agaagtcagg aaagctggac ttctgcagcg ccctctcctc
     1441 tcagggcagt tccccacgca tggctttcac ccaccacccg ctgcctgtgc ttgctggagt
     1501 cagaccaggg agcccccggg ccacggcatc agcgctgcac ttcccttcca cgtccatcat
     1561 ccagcagtcg agcccgtatt tcacacaccc aaccatccgc taccaccacc accatgggca
     1621 ggactcgctg aaggagtttg tgcagtttgt gtgctctgac ggctcgggtc aggccaccgg
     1681 acagcattca caacgacagg cgcctcctct gccaaccggt ttgtcagcat cggatcccgg
     1741 gacggcaact ttctgaacat cccacagcag tctcagtcct ggttcctctg attaagatca
     1801 acaaagaaac aactaaattt aaaaaaggaa aaaaaaaaaa gaggttcctc aaaatggggg
     1861 agaagaaatt ttgagacatg gaaatatccc ccagcccagc cccaccgaaa agcaaaactt
     1921 agacgtcgtc agccactcag cccttccctc ctccagccct ggtacccccg cgttccaaag
     1981 ccgcccagtt ctgggagtcc tcggaaaggg gtctcagcgg agctgtacac cagcagccaa
     2041 gcagaaagaa gcatgctaag cggactctgc taagcagagg acaaacagaa agaaaggatg
     2101 caacaagact gccttcctcc tactcagcct ggccttccca ggaaggagca gccagctcac
     2161 tggccggcca ccctggcagt tcctggggac cccaccctcc gctggactta agcttcccaa
     2221 ggagcccaga ggaacagctc gtaacaatag tagacattcg agctcccctc cggacttcgt
     2281 ctctttccct caccccaccc cccactcccc aacctctctt gcccttcctg ggagcctctg
     2341 ctcaggcttc tggccccagc tgctctggac caggctaggg cgttcccggg taggtaaggg
     2401 atgcttctta gagctaactg aattcagcct gagtccagaa tagagggtgt tctgccaccc
     2461 cattttgaac cgcccgggca gttctcgggc tggacaccct ctgtacagca cacaggaaag
     2521 tcagaatgct ctggactgga cgcccagccc agcataggca ccttcttcca cgcccgcagg
     2581 acgcaagggc tgctgccctc tgccacgccc ctagtgaagg gagtcggccc caggtcgccc
     2641 cgcaccccag ccctgcatgc aggtgccctt gctccgcccc tctgccctgc ccctgccctt
     2701 gctgcacaca gccctccagg ggccggctga gagtggagca gaaagggccc ccggagctga
     2761 gcgaggagga caaggcagcc tccacctgcg ctaggtaggc gtcctgctct cgagactttg
     2821 agttcctgtg gagggtgggg ggtgtcatcc ttttaaaaga gtgttctgga gctttctggt
     2881 ccccttccct tcccaccacg ccccgtggcc acttctccct agattttagc tgtaatgtct
     2941 ttcctcttta tttaggggtg gggcagtcat tgtttgggtc tttcgctgtt tgcagttggg
     3001 aactcctctg tttgagcaac ttgggaacaa tttcgtaaca caccacagga agcagttctc
     3061 ctcccagccc cctcctccag taagggatgg cggaggcttg tccagagggt cttgagaagc
     3121 cccctgggag ggaggggaac gcgagcacgc cagaccccct gcagggtgac tgggcccctc
     3181 tggcttgtct ttctgtgcct tagtcctcct tccctgcatc tcccctccca ggcccgttct
     3241 caaggccatg cgcctctctc cggtatgaaa acacaaagca caggtcagga tcttccgaaa
     3301 gtcggtccaa cattgcacca cgtgggggtg ggttgtgggc tttatttatt gagaatctag
     3361 ttggtgaggc tgcggccctg aacaggagaa tggccgctag cagggagctc ggggctgcga
     3421 ggcggctgtc cctgcgttct gtgtggaagt tgagcgaagc cctcccctgc ggcgtcgagg
     3481 gccaggccgg ggtggacgtc cagcgggggg aggcctccct gtgcgagggg agggagcccc
     3541 agggtggggg gccgggcggg ccgggcgtga cgcgcggtca aagtgcaatg atttttcagt
     3601 tcggttggct aaacagggtc agagctaaga gctagcgaaa gagggtccct gcccggccgc
     3661 gtgcgcctct tcggtcggtc gaggacagtc gggctgtggg cgctgtggga ttgcggggca
     3721 cacgccccgg gcgaggtcag aagctgcagg ccagctgggc cggggcccaa ggtgcccgag
     3781 agaggtaccc tcgggaggac tggggtgggg gtggtgctcc tttcccaagt ggtggtgtga
     3841 ggggcaggca ggcagggacg atgagggcga cagatgtggg gacgtgttta ggagaggaaa
     3901 caacccacaa aaaaatatag gggaaattaa cctttttttt tttattgaac caagtgcaat
     3961 gcatcagaga gttttcctat ctttgtatgt taagaga
//
