LOCUS       XM_036153796            5284 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus nuclear factor I/X (Nfix), transcript
            variant X5, mRNA.
ACCESSION   XM_036153796
VERSION     XM_036153796.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5284
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..5284
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="nuclear factor I/X; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, 2584 long SRA reads, 4 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 12 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
     CDS             211..1338
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /codon_start=1
                     /product="nuclear factor 1 X-type isoform X5"
                     /protein_id="XP_036009689.1"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
                     /translation="MSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDF
                     VLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER
                     LYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPN
                     GHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRS
                     ITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASL
                     KKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSS
                     PYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQSWFL"
ORIGIN      
        1 cagttttctc ttgtgtgtgc tgaatcgggt catagaggga gacttcccgt gcaaacagtt
       61 tgtgttggag ctggaggacg cagaggggga gagagggatg agttccaccc gtttatcgag
      121 gcgctgctgc ctcacgtccg agccttctcc tacacctggt tcaacctgca ggcgcggaag
      181 cgcaagtact tcaagaagca cgagaagcgg atgtcaaagg acgaggagcg cgcagtgaag
      241 gacgagctgc tgggcgagaa gcctgagatc aagcagaagt gggcatcccg gctgttggcc
      301 aagctgcgca aagacatccg gcccgagttc cgcgaggact ttgtgctaac catcacgggc
      361 aagaagcccc cctgctgcgt gctttccaac cccgaccaga agggcaagat ccggcggatt
      421 gactgcctgc gccaggctga caaggtgtgg cggctggacc tggtcatggt gattttgttt
      481 aaagggatcc ctttggaaag tactgatggg gagcggctct acaagtcgcc ccagtgctcg
      541 aaccccggcc tgtgtgtcca gccacatcac attggagtca caatcaaaga actggacctt
      601 tatctggctt actttgtcca cactccggaa tccggacaat cagatagttc aaaccagcaa
      661 ggagatgcgg acatcaaacc actgcccaac gggcacttaa gtttccagga ctgctttgtg
      721 acgtctgggg tctggaatgt gacagagctg gtgagagtat cacagactcc agttgcgact
      781 gcatcagggc ccaacttctc actggcggac ctggagagcc ccagctacta caacataaat
      841 caagtgaccc tgggaaggcg gtccatcacc tcccctcctt ccaccagcag caccaagcgc
      901 cccaagtcca tcgacgacag tgagatggag agtccagtag atgatgtgtt ctatcctggg
      961 acaggccgct ctccggccgc tggcagcagc cagtctagcg gatggcccaa tgacgtggat
     1021 gcaggccctg cttctctaaa gaagtcagga aagctggact tctgcagcgc cctctcctct
     1081 cagggcagtt ccccacgcat ggctttcacc caccacccgc tgcctgtgct tgctggagtc
     1141 agaccaggga gcccccgggc cacggcatca gcgctgcact tcccttccac gtccatcatc
     1201 cagcagtcga gcccgtattt cacacaccca accatccgct accaccacca ccatgggcag
     1261 gactcgctga aggagtttgt gcagtttgtg tgctctgacg gctcgggtca ggccaccgga
     1321 cagtcctggt tcctctgatt aagatcaaca aagaaacaac taaatttaaa aaaggaaaaa
     1381 aaaaaaagag gttcctcaaa atgggggaga agaaattttg agacatggaa atatccccca
     1441 gcccagcccc accgaaaagc aaaacttaga cgtcgtcagc cactcagccc ttccctcctc
     1501 cagccctggt acccccgcgt tccaaagccg cccagttctg ggagtcctcg gaaaggggtc
     1561 tcagcggagc tgtacaccag cagccaagca gaaagaagca tgctaagcgg actctgctaa
     1621 gcagaggaca aacagaaaga aaggatgcaa caagactgcc ttcctcctac tcagcctggc
     1681 cttcccagga aggagcagcc agctcactgg ccggccaccc tggcagttcc tggggacccc
     1741 accctccgct ggacttaagc ttcccaagga gcccagagga acagctcgta acaatagtag
     1801 acattcgagc tcccctccgg acttcgtctc tttccctcac cccacccccc actccccaac
     1861 ctctcttgcc cttcctggga gcctctgctc aggcttctgg ccccagctgc tctggaccag
     1921 gctagggcgt tcccgggtag gtaagggatg cttcttagag ctaactgaat tcagcctgag
     1981 tccagaatag agggtgttct gccaccccat tttgaaccgc ccgggcagtt ctcgggctgg
     2041 acaccctctg tacagcacac aggaaagtca gaatgctctg gactggacgc ccagcccagc
     2101 ataggcacct tcttccacgc ccgcaggacg caagggctgc tgccctctgc cacgccccta
     2161 gtgaagggag tcggccccag gtcgccccgc accccagccc tgcatgcagg tgcccttgct
     2221 ccgcccctct gccctgcccc tgcccttgct gcacacagcc ctccaggggc cggctgagag
     2281 tggagcagaa agggcccccg gagctgagcg aggaggacaa ggcagcctcc acctgcgcta
     2341 ggtaggcgtc ctgctctcga gactttgagt tcctgtggag ggtggggggt gtcatccttt
     2401 taaaagagtg ttctggagct ttctggtccc cttcccttcc caccacgccc cgtggccact
     2461 tctccctaga ttttagctgt aatgtctttc ctctttattt aggggtgggg cagtcattgt
     2521 ttgggtcttt cgctgtttgc agttgggaac tcctctgttt gagcaacttg ggaacaattt
     2581 cgtaacacac cacaggaagc agttctcctc ccagccccct cctccagtaa gggatggcgg
     2641 aggcttgtcc agagggtctt gagaagcccc ctgggaggga ggggaacgcg agcacgccag
     2701 accccctgca gggtgactgg gcccctctgg cttgtctttc tgtgccttag tcctccttcc
     2761 ctgcatctcc cctcccaggc ccgttctcaa ggccatgcgc ctctctccgg tatgaaaaca
     2821 caaagcacag gtcaggatct tccgaaagtc ggtccaacat tgcaccacgt gggggtgggt
     2881 tgtgggcttt atttattgag aatctagttg gtgaggctgc ggccctgaac aggagaatgg
     2941 ccgctagcag ggagctcggg gctgcgaggc ggctgtccct gcgttctgtg tggaagttga
     3001 gcgaagccct cccctgcggc gtcgagggcc aggccggggt ggacgtccag cggggggagg
     3061 cctccctgtg cgaggggagg gagccccagg gtggggggcc gggcgggccg ggcgtgacgc
     3121 gcggtcaaag tgcaatgatt tttcagttcg gttggctaaa cagggtcaga gctaagagct
     3181 agcgaaagag ggtccctgcc cggccgcgtg cgcctcttcg gtcggtcgag gacagtcggg
     3241 ctgtgggcgc tgtgggattg cggggcacac gccccgggcg aggtcagaag ctgcaggcca
     3301 gctgggccgg ggcccaaggt gcccgagaga ggtaccctcg ggaggactgg ggtgggggtg
     3361 gtgctccttt cccaagtggt ggtgtgaggg gcaggcaggc agggacgatg agggcgacag
     3421 atgtggggac gtgtttagga gaggaaacaa cccacaaaaa aatatagggg aaattaacct
     3481 tttttttttt attgaaccaa gtgcaatgca tcagagagtt ttcctatctt tgtatgttaa
     3541 gagattaaga aaaaaaattc tatttttgtt gtaatgtcct cgcggctctg gggacgctaa
     3601 aagaactggg cctgccctgc ccttagcggg gatgaaagct gagtgttttc cttttttttg
     3661 tttttttttt tgtttgtttt cctttttgat agttttctgg gtttttgttt gttggtttgg
     3721 ttggttggtt ttttttttgt tttttttttt ttgttttgcc ttttttcctg cgttgacgag
     3781 gataatctgg ggtttaaatt tgtttcgtcg ttcggtttcg gtgggagggc tgaagaaaac
     3841 gtttaaaaac acctcgacat taaaaaaaaa aaaccaacac aagatcaaaa ggaaaaggac
     3901 gagagaaaat tatttttaag ataattaaac ataaaaaccc tggtgcttat tacattataa
     3961 agtacgtttt taaaaaccca caaactatta tacatacgtt tatgaatcaa ttaaatactc
     4021 tgcacttgtt aggaacacgc atatcccttc tttgttgagt ttaacggaac gggacagcgg
     4081 cgtgcgcccc gcggctgggc tgctctggcc gcgggtctcc ccaggcgctc cccccttcct
     4141 cgccccctcc ccctccgggc actggggcgc ggcgggggtc cccggccccc tcccccgcag
     4201 aggtcaatgc caacgaacaa acgtcccttt tccctccctc cccactccga gcgcccttct
     4261 ttgagccaga cgccaacttg accctcacca gcattaatca ggagcgcgct cagcaagttg
     4321 gtagtttcct ccccgacccc ttcccacgta acaccactat tccccctccc tccgggaggt
     4381 tcgatgctcc aggacaggtc cagccacgct gacaggtcga tttgcccagg cccgcgcccg
     4441 cacgcacgca cgcacatagc ccggcacaca cccccaccct accccgcaac cagccctgtc
     4501 gactgcctta cacacccgcc cccgcgctgg ccggccgacc tagtgccttg ttctcacccc
     4561 cgtgctggcg gagcggacgc cgcgctctgg gtcccagagg ggccgggtgg ctcagacgac
     4621 ccaccgtttc ccccaacccg accgtactga acggaccccc cacgagagaa aaaaaaaagg
     4681 agcaataaag ttatgagaac tttgtccccc aatcgagagc cctaggggca ccccagcccc
     4741 acctctgctc cctcccaccc catccaccct cggggcgtcc cactctgcgc aagccagctg
     4801 gggccaaccc ctgctttggc ccctcttggg agatccgtgc gccccatcag caccagcatc
     4861 gcggaccgca aaggccgccc gtcccgtcaa acaagtttct tcttaggcta agaaacgcag
     4921 tatatacgag tatctctata tatatatagt actaatggat ttggtgtgct tcccccttag
     4981 cgtcccttcc ctctgctcct ctttcagcct ggtctccctt ctctgccctc caattcccct
     5041 cccccgtctc tgcactgaga tacataagaa acaagggtag tttactgtct gttttgtttt
     5101 ctgggttttc agtgtcctag cggaatgcaa gtaggcagcc agcccgtctg tcccctctcc
     5161 gcccgccccg ccccgcccca ccccagtcac tgcgcttctg ttataccatc tttgcctgac
     5221 tctcttcggc ttctccattg aatggctaat gtgtatgtga aataaagaaa taaagaaaaa
     5281 caaa
//
