LOCUS       XM_030243341            1752 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus nuclear factor I/X (Nfix), transcript
            variant X11, mRNA.
ACCESSION   XM_030243341
VERSION     XM_030243341.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030243341.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..1752
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="nuclear factor I/X; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 559 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 20 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
     CDS             223..1716
                     /gene="Nfix"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /codon_start=1
                     /product="nuclear factor 1 X-type isoform X11"
                     /protein_id="XP_030099201.1"
                     /db_xref="GeneID:18032"
                     /db_xref="MGI:MGI:97311"
                     /translation="MDMSWDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRM
                     SKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLS
                     NPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQ
                     PHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTSGVW
                     NVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTKRPKSI
                     DDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
                     SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQ
                     DSLKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKTTST
                     APDGAALTPPSPSFTTTGASSANRFVSIGSRDGNFLNIPQQSQSWFL"
ORIGIN      
        1 gatgttccaa caggatctgg agaaaagaaa atgcaaacag tctggtgaga ggggacccaa
       61 agctgcttcc tgcatctcag atggcatttt ctggcttctg ggggcagcca aacattggcc
      121 agtccggaca aggcagttct tgcatgccct ttggtctgca ccctcagggg cagcaggaca
      181 ctactggaac cagctgaccc tagttcacag ctgctgtaga acatggacat gtcatgggat
      241 gagttccacc cgtttatcga ggcgctgctg cctcacgtcc gagccttctc ctacacctgg
      301 ttcaacctgc aggcgcggaa gcgcaagtac ttcaagaagc acgagaagcg gatgtcaaag
      361 gacgaggagc gcgcagtgaa ggacgagctg ctgggcgaga agcctgagat caagcagaag
      421 tgggcatccc ggctgttggc caagctgcgc aaagacatcc ggcccgagtt ccgcgaggac
      481 tttgtgctaa ccatcacggg caagaagccc ccctgctgcg tgctttccaa ccccgaccag
      541 aagggcaaga tccggcggat tgactgcctg cgccaggctg acaaggtgtg gcggctggac
      601 ctggtcatgg tgattttgtt taaagggatc cctttggaaa gtactgatgg ggagcggctc
      661 tacaagtcgc cccagtgctc gaaccccggc ctgtgtgtcc agccacatca cattggagtc
      721 acaatcaaag aactggacct ttatctggct tactttgtcc acactccgga atccggacaa
      781 tcagatagtt caaaccagca aggagatgcg gacatcaaac cactgcccaa cgggcactta
      841 agtttccagg actgctttgt gacgtctggg gtctggaatg tgacagagct ggtgagagta
      901 tcacagactc cagttgcgac tgcatcaggg cccaacttct cactggcgga cctggagagc
      961 cccagctact acaacataaa tcaagtgacc ctgggaaggc ggtccatcac ctcccctcct
     1021 tccaccagca ccaagcgccc caagtccatc gacgacagtg agatggagag tccagtagat
     1081 gatgtgttct atcctgggac aggccgctct ccggccgctg gcagcagcca gtctagcgga
     1141 tggcccaatg acgtggatgc aggccctgct tctctaaaga agtcaggaaa gctggacttc
     1201 tgcagcgccc tctcctctca gggcagttcc ccacgcatgg ctttcaccca ccacccgctg
     1261 cctgtgcttg ctggagtcag accagggagc ccccgggcca cggcatcagc gctgcacttc
     1321 ccttccacgt ccatcatcca gcagtcgagc ccgtatttca cacacccaac catccgctac
     1381 caccaccacc atgggcagga ctcgctgaag gagtttgtgc agtttgtgtg ctctgacggc
     1441 tcgggtcagg ccaccggaca gcccaacggt agcggccagg gcaaagtccc ggggtcattt
     1501 ttgctaccgc cgccgcctcc agtggccaga cctgtgcccc ttcctatgcc tgattccaaa
     1561 accaccagca cggccccaga cggcgccgcc ttgactcctc catcaccttc attcacaacg
     1621 acaggcgcct cctctgccaa ccggtttgtc agcatcggat cccgggacgg caactttctg
     1681 aacatcccac agcagtctca gtcctggttc ctctgattaa gatcaacaaa gaaacaacta
     1741 aatttaaaaa ag
//
