LOCUS       NM_021546               1810 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus N-terminal EF-hand calcium binding protein 3 (Necab3),
            transcript variant 3, mRNA.
ACCESSION   NM_021546
VERSION     NM_021546.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Zimmermann,B., Girard,F., Meszar,Z. and Celio,M.R.
  TITLE     Expression of the calcium binding proteins Necab-1,-2 and -3 in the
            adult mouse hippocampus and dentate gyrus
  JOURNAL   Brain Res 1528, 1-7 (2013)
   PUBMED   23850650
  REMARK    GeneRIF: The genes for the three Necab's, including Necab-3, were
            expressed in specific, non-overlapping areas of the hippocampus.
REFERENCE   3  (bases 1 to 1810)
  AUTHORS   Kim,H.T., Kim,E.H., Yoo,K.W., Lee,M.S., Choi,J.H., Park,H.C.,
            Yeo,S.Y., Lee,D.S. and Kim,C.H.
  TITLE     Isolation and expression analysis of Alzheimer's disease-related
            gene xb51 in zebrafish
  JOURNAL   Dev Dyn 237 (12), 3921-3926 (2008)
   PUBMED   19035353
  REMARK    GeneRIF: xb51 may be required for maturation and maintenance of
            xb51-expressing neurons in the forebrain
REFERENCE   4  (bases 1 to 1810)
  AUTHORS   Yoo,J.C., Chang,J.R., Kim,S.H., Jang,S.K., Wolgemuth,D.J., Kim,K.
            and Rhee,K.
  TITLE     NIP1/XB51/NECAB3 is a potential substrate of Nek2, suggesting
            specific roles of Nek2 in Golgi
  JOURNAL   Exp Cell Res 292 (2), 393-402 (2004)
   PUBMED   14697346
  REMARK    GeneRIF: Physical interactions of Nek2 with NIP1 were confirmed. In
            fact, Nek2 can phosphorylate NIP1 in vivo. Immunostaining
            experiments revealed that NIP1 is a Golgi protein.
REFERENCE   5  (bases 1 to 1810)
  AUTHORS   Lee,D.S., Tomita,S., Kirino,Y. and Suzuki,T.
  TITLE     Regulation of X11L-dependent amyloid precursor protein metabolism
            by XB51, a novel X11L-binding protein
  JOURNAL   J Biol Chem 275 (30), 23134-23138 (2000)
   PUBMED   10833507
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK158225.1.
            
            On Jun 19, 2007 this sequence version replaced NM_021546.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158225.1, AK044296.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1810              AK158225.1         3-1812
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 76.79 cM"
     gene            1..1810
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /note="N-terminal EF-hand calcium binding protein 3"
                     /db_xref="GeneID:56846"
                     /db_xref="MGI:MGI:1861721"
     exon            1..116
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            117..141
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            142..250
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            251..276
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            277..374
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            375..511
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            512..630
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            631..710
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            711..764
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            765..877
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            878..955
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1047
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1810
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1065..1070
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /note="hexamer: AATAAT"
     polyA_site      1097
                     /gene="Necab3"
                     /gene_synonym="2900010M17Rik; Apba2bp; Nip1; XB51"
                     /note="major polyA site"
ORIGIN      
        1 caagcctccg agccatggcg tgcgccgggc tgcttactgt gtgcctgctc gggccacctg
       61 cgccccagca gccgcgacac tctgcgcctg ccgcgggaca cgcgcttttc caggacgttt
      121 tccgaagagc agacaaaaat gatgatggta agctctcgtt tgaagaattc cagaattact
      181 ttgctgatgg ggttctcagc tctgcggagc tgcgggaact gttcagcggc atcgatgatc
      241 atctcactga caatttagag acagagaaac tgtgtgacta cttctccaca cacctgggtg
      301 tctaccggcc cgtgctggct gcgctggagt ctctgaaccg tgcggtgctc actgccatgg
      361 acactacaaa gctggagtat gaacaggcct ccaaggtgga ccagtttgtc acacgatttc
      421 tgctgcggga gactgtcaat cagctacaag ccctgcagac ctccctggag ggagcatcag
      481 acaccctgga ggcgcaggcc catggccagc ggttggatga agaaactatc aaagcgcaga
      541 gtaggccctg tggcagccgg agggcaggac gcagagccct aaggagcatc agttggtcac
      601 catcctggtc tcctggatcc tctgatacag ggcggagttc agaggctgag cagcagtggc
      661 ggctacaggt caaccgcctc caggagctca tagaccagct tgagtgcaag gcaccccggc
      721 tggaacccac acatgaggag gacctcacca aggggtttga ctcgcacatc cttgtggcgc
      781 agaggcaagt gcaggtggca gaggatgccc tgcaggattt tcatcgtgct ttgtgctgct
      841 acatgaactt cacaggggcc caaagccatt gtctgcatgt gtctgcccag aagatgctag
      901 acaatgctgc tttcaccctg tatgagttct ggcaggatga agcctcctgg agaaggcacc
      961 agcagtcacc ctgcagcaag gccttccagc gcaccctcat cgatcacctg caggccccgg
     1021 acactctcac cactgtgttc ttcccagcct cctggtggat tatgaataat aactgagtca
     1081 gttctgctta aactggagac tgcagccctg cctatcattc tggagccctc tgcactggtt
     1141 gactctacac taaaatcatg gaacctgcct gttaccaggc taaaggcctg gtcatctggt
     1201 agagggtctc tcagcccagg gatcaggagc taggccgttt gcttgcttta tttattttac
     1261 tgtttgtagc ttccaagcac ctgggcttct gcctgattca ggaaacccgg attctggtcc
     1321 cccttccctc tctaccttgc tgtgtgaccc aggcagatcc ctcacctctc tggctgccta
     1381 ggagagtcct gctttctgct tgctgctttg gggttaagtt tctgttcttc ctcaaccagt
     1441 ggcagaacca ggactgatgc tcagggactc ccctctcccc cctcaaaccc tggaaccttg
     1501 acccttgagg ctaggccaac tcagtctata gtgtagagac ccatggggtc agccctaaaa
     1561 tttctaccat cagtggttgt accagagacc tctggaagat cctgggtcgg tttgcatgtc
     1621 atttgcctat catttgcatg tcttatccca cccattctca gggtactaag ggaagcccca
     1681 agaagacctt gcagagtagc aataatttgg gcctagagtt gcctgctgcc cccaccccct
     1741 ccatcaagag atctctgaac cccagcctgg gccttgagca cagaggcaat aaagctggta
     1801 gtcacctgtg
//
