LOCUS       NM_027093               2732 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus NADH:ubiquinone oxidoreductase complex assembly factor
            5 (Ndufaf5), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_027093
VERSION     NM_027093.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2732)
  AUTHORS   Magdaleno,S., Jensen,P., Brumwell,C.L., Seal,A., Lehman,K.,
            Asbury,A., Cheung,T., Cornelius,T., Batten,D.M., Eden,C.,
            Norland,S.M., Rice,D.S., Dosooye,N., Shakya,S., Mehta,P. and
            Curran,T.
  TITLE     BGEM: an in situ hybridization database of gene expression in the
            embryonic and adult mouse nervous system
  JOURNAL   PLoS Biol 4 (4), e86 (2006)
   PUBMED   16602821
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY242834.1, CD363717.1, AK009123.1 and AL844528.13.
            
            On Jan 31, 2008 this sequence version replaced NM_027093.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC005630.1, SRR1660817.371205.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                BY242834.1         2-31
            31-685              CD363717.1         1-655
            686-1112            AK009123.1         753-1179
            1113-2732           AL844528.13        75546-77165
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 69.2 cM"
     gene            1..2732
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /note="NADH:ubiquinone oxidoreductase complex assembly
                     factor 5"
                     /db_xref="GeneID:69487"
                     /db_xref="MGI:MGI:1916737"
     exon            1..288
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..1098
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /note="probable methyltransferase C20orf7 homolog,
                     mitochondrial; NADH dehydrogenase [ubiquinone] 1 alpha
                     subcomplex assembly factor 5; putative methyltransferase
                     NDUFAF5; arginine-hydroxylase NDUFAF5, mitochondrial; NADH
                     dehydrogenase (ubiquinone) complex I, assembly factor 5"
                     /codon_start=1
                     /product="arginine-hydroxylase NDUFAF5, mitochondrial
                     precursor"
                     /protein_id="NP_081369.2"
                     /db_xref="CCDS:CCDS16804.2"
                     /db_xref="GeneID:69487"
                     /db_xref="MGI:MGI:1916737"
                     /translation="MLRKVVLLRLCPLLGRPAVSASSGSRREVASGVPPSGSTSPRAL
                     NIFDRELKRKQKNWAARQPDPMKFDYLKEEVGSRIADRVYDIARDFPLALDIGCGRGY
                     IAQHLDKETVGKIFQTDIAEHALKNSLETDIPTVNILADEEFLPFQENTFDLVVSSLS
                     LHWVNDLPRALEQIHYVLKPDGVFVGAMFGGDTLYELRCSLQLAETEREGGFSPHISP
                     FTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLKGMGESNCSWNRKALLHR
                     DTMLAAAAVYREMYRNEDGSIPATFQIYHMIGWKYHDSQARPAERGSATVSFGELAKL
                     NDVMSHEKK"
     exon            289..329
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            330..393
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            394..441
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            442..545
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            546..585
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            586..783
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            784..844
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            845..928
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            929..1011
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..2732
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1065..1070
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /note="hexamer: ACTAAA"
     regulatory      1097..1102
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1102
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
     polyA_site      1118
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /note="major polyA site"
     regulatory      1144..1149
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1169
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
     regulatory      2710..2715
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2732
                     /gene="Ndufaf5"
                     /gene_synonym="2310003L22Rik"
ORIGIN      
        1 agtcgtagtc ccgttggcgc atgcgcctaa tagaaaccat gccctgctgt ggcgcccggg
       61 ctgaagatgc tgcgaaaggt cgttcttttg cgcctctgcc cactgcttgg ccggccagcg
      121 gtctctgcat cgagcggcag tcgcagggag gtcgcttctg gtgtccctcc ttcgggcagc
      181 acctcgccca gagccctaaa catcttcgac agggaattga agaggaagca gaagaattgg
      241 gccgcccggc agcccgaccc catgaaattt gactacctga aggaggaggt tggaagtcgg
      301 attgcagacc gtgtttatga catagccaga gactttcccc ttgccctgga cataggatgt
      361 ggaagaggct acatagcaca acatttggat aaggagactg tgggaaagat cttccaaaca
      421 gacattgcag agcatgcttt gaaaaattct ttagaaacag atattcctac tgtgaatatt
      481 ttagctgatg aagaattcct tcccttccaa gaaaacacgt ttgacctggt ggttagcagc
      541 ttaagtttgc actgggtgaa tgacctcccg agagcacttg aacagattca ttatgtctta
      601 aaaccagatg gggtgtttgt tggtgcaatg tttggaggcg acacactcta tgaactccgg
      661 tgttcattac agctagcaga aactgaaagg gaaggaggct tttccccaca tatttctcct
      721 ttcactgctg tcaatgacct agggcatctg ctgggaagag ctggcttcaa cactctgact
      781 gtggatactg atgaaattca agttaactat cctggaatgt ttgaattgat ggaagattta
      841 aaaggtatgg gtgagagcaa ctgttcttgg aacagaaaag ccctgctgca ccgagacaca
      901 atgctggcag ctgcagcggt ttacagagaa atgtaccgga atgaggatgg ttccatacct
      961 gccacctttc agatctacca catgatagga tggaaatacc atgactctca ggcaaggcca
     1021 gctgaaagag gttctgcaac cgtgtcattt ggagagctag caaaactaaa tgatgtcatg
     1081 tcgcatgaga aaaaataata aatactttgt tcaattgtta tgtttcccag aattttcatc
     1141 agaaataaat agctttcaca tttaaactag tacagtttga agcaaggtgc aaccgattga
     1201 gctatttact agcaacctaa tactaactca tgcttagtat tccaagttct catttgtttc
     1261 tatttatgta aagatgctgt tacatagtga ctgggcatcc ttgcagagtc agcctgaaag
     1321 caaagaaaat gtgttcccgt gggtggggtg gggacctaga aaccggtgca catgtgtgag
     1381 cacgtgactt gatgggaacg cttgctccag ctctggttct gcacctttct tcccattgct
     1441 cctttgttat cgctgtggga tggtcacacc cctgaagacg agaggaagga caaattgctg
     1501 ggctcctgag agttcctgtg cagtacagtg agatcacttc acagtgcctg ctgcagacac
     1561 tgatgtcgga attgtttgtt gtactttttg tatttttgga gtcagatctc actatggaga
     1621 cttggttggc ctggaactac catgtagact aggctggact ctactcgtat tgactcgtct
     1681 gctttagtcc tgggattaca ggcatgcctg tggcccgcca cacctagtat ttgtcacgct
     1741 tctgtcttgt ccagatgact agaggattct atacagcctc cgcagctact ctgtagcttt
     1801 gaccttgaga cgagcatctg tctttaccag atccatccct cttttcctag atttgttaat
     1861 tctgttgttg tgattttgtt tttaaagtct tattctatgt acgtgaggat cttgccggca
     1921 tgtttatttc acgtgcgtgc ttggtgcctg cggagaccag agagggcgtt tggatcttgg
     1981 aacaatgcta aggatgactg ggagccactt caggtttgct gggaacgctg ctctaacagt
     2041 gagccatctc cagctcctcc tcgcctcgtt tacaagcatc cgaactctgt tcctgcttgt
     2101 tcttttcttt tcttctttct ttttaacatc tagggtctgg gttgcctaca ctacttaaga
     2161 gaagaaacca ttttaaagaa tcagaggtaa aatctcacgt agacaccatt gcccagtgat
     2221 taacaagctg tttacactca ggctttcctt ggttaacttt agacctattg cactattatc
     2281 ctaaatccag gttcactgtc ttgacatctc agggtcagaa gatttggagg cagtgaaaag
     2341 cttgccctgg gctttgcctt gggacatgtg gtctctaacc actgctcctg tttgggtgtt
     2401 tgtggaccgt aggagttgag gccaggatgg aggaagttgc cactaggggc aagccttgat
     2461 gtttgctgga tgtcctgact ctggtcgctt tgcttcttga tttgctcaaa taagagcaag
     2521 tgtactctgc tgacgcccac agagctgtcc ttgctgcctt gcctgtcctg tcctcatggc
     2581 cagtccaaaa cagtcttccc ttatctcttc ttctcaggta tttaaccata gtgccaggca
     2641 aagcaacgaa tgcagtagca aaactcacta cgttgtccta tcgagaattt ttgcaaaatt
     2701 tgttaaatta ttaaatggca tatggaaaac aa
//
