LOCUS       NM_001001884            4835 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus NCK-associated protein 5-like (Nckap5l), mRNA.
ACCESSION   NM_001001884 XM_354878
VERSION     NM_001001884.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4835)
  AUTHORS   Jensen,P., Magdaleno,S., Lehman,K.M., Rice,D.S., Lavallie,E.R.,
            Collins-Racie,L., McCoy,J.M. and Curran,T.
  TITLE     A neurogenomics approach to gene expression analysis in the
            developing brain
  JOURNAL   Brain Res Mol Brain Res 132 (2), 116-127 (2004)
   PUBMED   15582152
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117831.6 and AC118646.23.
            
            On Mar 31, 2022 this sequence version replaced NM_001001884.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC072572.1, SRR9219380.58173.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                AC117831.6         57870-57967         c
            99-159              AC117831.6         36265-36325         c
            160-309             AC117831.6         34278-34427         c
            310-378             AC117831.6         33808-33876         c
            379-417             AC117831.6         33683-33721         c
            418-537             AC117831.6         32943-33062         c
            538-651             AC118646.23        202832-202945       c
            652-3266            AC118646.23        199031-201645       c
            3267-3426           AC118646.23        197596-197755       c
            3427-3508           AC118646.23        197431-197512       c
            3509-3817           AC118646.23        196844-197152       c
            3818-3960           AC118646.23        196614-196756       c
            3961-4835           AC118646.23        195512-196386       c
FEATURES             Location/Qualifiers
     source          1..4835
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 56.13 cM"
     gene            1..4835
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /note="NCK-associated protein 5-like"
                     /db_xref="GeneID:380969"
                     /db_xref="MGI:MGI:3609653"
     exon            1..98
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            99..159
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            160..309
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            310..378
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            379..417
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            418..537
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            538..651
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            652..3266
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            3267..3426
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            3427..3508
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            3509..3817
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            3818..3960
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     exon            3961..4835
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4805..4810
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /note="hexamer: AATAAA"
     polyA_site      4835
                     /gene="Nckap5l"
                     /gene_synonym="C230021P08Rik; Cep169"
                     /note="major polyA site"
ORIGIN      
        1 ggtacccccc ttttcctgca cccccctcgc cctcccgccc ccgagatgcg gccatggacc
       61 ctgtggacca agccagtcga gctcagcacc tgatttcggt gaggtgaccc atctggctgc
      121 cagagtgaac gagccagcct ggtgaggaac agagacctgc ctgccaggcc tcattcccag
      181 agcctgactc ccaaggtcat ggaccagccg gccggaggca ccggaaagct gagggcatcg
      241 gctggtgagg acgacagcat ggagctcagc acctgccagg agcttctgca ccgacttcgg
      301 gagctggagg cagagaactc ggcgcttgcg caggccaatg agaaccagcg ggagacttac
      361 gaacgctgtc tggatgaggt tgccaaccac gtggtacagg ctctactgaa ccagaaggac
      421 ctgcgggaag agtgtatcaa actgaagaag agggtgtttg acctggagcg gcagaatcag
      481 gtgttgagtg cactactgca gcagaaacta cagctcacgg ccaactccct ccctcagatc
      541 ccactcacac cactccagcc gccatcagaa cgaccaacct ccccagcccc aaatgtctct
      601 gagggaccag ccacctcact gccttcagga ctctgtgctg ggcaaagaga ggtgtgttgg
      661 gagcagcagt tacggccagg cggtccaggt cccccggcta ctccaccccc ggcgctggat
      721 gccctgtccc catttcttcg gaagaaagct cagattttag aggtgctgcg agccttggaa
      781 gagacggacc ctttgctttt gtgctcacct gccaccccct ggagacccac aggccaaggc
      841 cctggctccc cagagcccat caatggcgag ccctgtggcc caccgcagcc tgaaccctca
      901 ccctgggcac cctacctgct gctcggtcct gggagcctgg gggcactgct gcactgggag
      961 cgggtcttag ggggccctgg ggaagaagaa ggcatccggc aaccctgggc ttctagcagg
     1021 gccccaccgt cagcccaggg ccccagctcc ggcccacact gtgctccagg cagcagctcc
     1081 tcctcttctt ctgatgaagc aggagacccc aatgaggccc ccagccccga caccctgctt
     1141 ggtgccctgg cccgcaaaca gttaaatcta ggccagctcc ttggagacac agagacttac
     1201 ctccaagctt tcctggctgg ggcgacaggc cccctcagtg gcgaccagcc aggccctggg
     1261 aagccaaact caccagatcc aggaccccca caggtgtcca agtccaaagg cctcccaaag
     1321 tcagcttggg gtgcaagtac cccagaggcc accaggctgg gctttggtgc tacctcagag
     1381 ggccaggggc cccttccctt cctcagcatg ttcatgggtg caggggatgc cccgctgggg
     1441 tcccggcctg gccatcccca ctcctcatct caggtgaaaa gcaagctcca gattgggccc
     1501 ccctcccccg gggacgccca gggacccctt ctgccctctc cagccagagg tctcaagttt
     1561 ctcaagctgc ctccagcctc agagaaggtc cccagcccag gaggtcccca actcagtccc
     1621 cagcttcccc ggagctctcg aatcccttgt cgcaacagtg gctcagatgg cagcccctcc
     1681 ccattgctgg ctcgaagggg tctgggtgga ggagagctgt ccccagaggg ggcacagggc
     1741 ctgcccggca gccctctgcc ctgctccgca atgccagact ctgcgcagct cagaccctcc
     1801 cagtcgactg tgtccactgc tctgtctcca ggacccgtag tgtctccctg ctttgaaaac
     1861 atcctagacc tttcccggag cacctttagg ggttctcccc cagaaccacc tccttccccg
     1921 ctgcaggtgc ccacctaccc acaattgact ctggaggtgc cccagacccc tgaggtcctc
     1981 aggagccctg gggcccccag ccctggcctt ccagaatctt gtccctacag cggcccccag
     2041 gagaagagca tggacagggc aggctctgag tctccccatg ccagccgcag gaccccgggt
     2101 ggctcatcca agaagcctgg ccagggatct gggcgacgac ctggtgatcc tagccacaca
     2161 cctctgcgag acagattggc agcacttggg aaactgaaga caggccccga ggggcctctg
     2221 ggtccagaaa agaatggggt gccagcccgg tctagcgctg agaaggccag ggcactagtg
     2281 cggtctggtg agtgtgctgg agacgtgccg cccagcgcaa gacctctgga gcagccagaa
     2341 gctaagggta tctttcgggg agcagtggcc ttgggcacaa gcagcctgaa gcagcaggaa
     2401 ccgggactta cagatcctgg tgccagagtc tactcctctc attccatggg agctcgagtg
     2461 gacctggagc ccatctcacc gaggagctgc ctcaccaaag tggagctggc caagagtcgg
     2521 ctagcagggg ctctgtgtcc ccagatgccc cgcacacctg caaaagtgcc aacctcagcc
     2581 cctagcctgg gcaaacccaa aagccctcac agcagcccga caaagctacc ctccaagtcc
     2641 cccaccaagg tggtaccccg ccctgtggta cccttaggca ccaaggagcc ccccaagcct
     2701 gacaaagtga agggcccacc ctgggcagat tgtggcagca cagttggcca gcctacatcc
     2761 ccagtagccg gccccgccga cccaagccag ggctcagaag ggccagcccc acactcggcc
     2821 atcgaggaga aggtgatgaa gggcattgag gagaacgtgc tgcgccttca aggtcaggaa
     2881 cggactccgg gctccgaagc caaacaccgc aacaccagca gcatcgccag ctggtttggc
     2941 cttaaaaaga gcaagctgcc ggctctgaac cgccgcactg aggctaccaa aaacaaggac
     3001 ggggccggtg ggggctcccc actccggaaa gaagtcaaga cggaagcccg gaagctggag
     3061 gctgagagcc tcaacatctc caagctgatg gcgaaggcag aagacctgcg ccgagcccta
     3121 gaggaagaga aggcgtacct gagcagagcc cgcccacggc ctgggggccc agccaccgtg
     3181 cccagtcctg gtctggggca ggcgcaaggc cagctagccg gcatgtatca gggtgcagac
     3241 accttcatgc aacagctact gaacagggtg gatggcaagg agctgccccc caagagctgg
     3301 cgggaaccca agcctgagta tggggatttc cagccagtgt ccactgaccc caagagcccc
     3361 tggcctgcct gtgggcctcg gaatggcctg gtaggcccac tccagggctg cggaaaacct
     3421 gggaagccca gcagtgagcc aggaaggcgg gaagagatgc cctctgaaga cagcctggcg
     3481 gagccagttt ccaccacgca cttcacagcc tgcggctcct tgactcgaac cttggacagt
     3541 ggcattggga ccttcccacc cccagatcac agcagcagcg gaacccccag caaaaatctc
     3601 cccaagacca agtcactgcg cctggatccc ccaccagggg cacccccagc tcggcctcca
     3661 ggcctcacca aagtcccccg ccgtgcccac acactagagc gagaggtgcc gggcatagag
     3721 gagctgctgg tgagtgggcg acaccccagc atgccagcct tccctggact gctcacagct
     3781 cccccaggcc accgaagcca tcagacctgt cccgatgatc cctgtgaaga cccaggccct
     3841 cccccacctg tccagctggc caagaactgg accttcccca acaccagaac agctggcagc
     3901 tccagcgacc ccttcctgtg cccaccccga caactggagg gactgcctag aacccccatg
     3961 gccctgcccg tagaccgaaa acagagcgtg gatcccagcc gcacatctac acctcagggc
     4021 ccagcatttg gaggcagtcg tacccccagc acgtcggaca tgggcgagga aggccgagtg
     4081 gccagcgggg gcgcccccgg gctggagacc tcagaatccc taagtgactc cctctatgac
     4141 tcgctatcct cctgtgggag tcagggttga gggaccgcac ccactacagt tcctctggag
     4201 ctagggaccc tcaacgacct gcttccgcgc tccacgcccc acgcctttgg gccggtgaag
     4261 cttgacctga agggaccaag gagaaagagg ataagaaggc gatggggggt ccctggcgta
     4321 tgccactgct gctgtggatg cgacaaccat gctcagctca gggagagacc tcatccccag
     4381 tcccttgact cccccagagt aaggctctgc tctacgggac cgggggctcc aggctgcttt
     4441 gtcccagctc ccacttcagg ccgagccatc ttgcggtgct aggcttcctg cccgccagct
     4501 gtgccacctc tgcccaacct ggctgcaacc ctgccccaaa gcccccatgg ggctgatttt
     4561 ggaagcccca ggcttatgga gtttgggggt gagggggaca agtcgccttc actctgccct
     4621 ggtcctccct gctgtctgaa tggtgctgcc tcccttcccc acatcgtggg gtctgtttgt
     4681 ctgtcttcat ctttgttttt atatatatat atatatataa gcgcctggcc cagtccccac
     4741 ccctacccgc actgcggtta atttatctgt tgttgaaaag cagccctgct tctgcagcat
     4801 ccctaataaa acgtggaggc ctctccccac cgtga
//
