LOCUS       NM_001081756            7246 bp    mRNA    linear   ROD 24-DEC-2024
DEFINITION  Mus musculus NCK-associated protein 5 (Nckap5), transcript variant
            1, mRNA.
ACCESSION   NM_001081756
VERSION     NM_001081756.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 7246)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 7246)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 7246)
  AUTHORS   Bulfone,A., Carotenuto,P., Faedo,A., Aglio,V., Garzia,L.,
            Bello,A.M., Basile,A., Andre,A., Cocchia,M., Guardiola,O.,
            Ballabio,A., Rubenstein,J.L. and Zollo,M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   4  (bases 1 to 7246)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CN700744.1, AK053243.1 and BC066095.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and it encodes the longest protein (isoform 1).
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-573               CN700744.1         11-583
            574-1186            AK053243.1         257-869
            1187-6293           BC066095.1         1048-6154
            6294-6943           AK053243.1         1730-2379
            6944-7201           AK053243.1         2381-2638
            7202-7246           BC066095.1         7064-7108
FEATURES             Location/Qualifiers
     source          1..7246
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 54.7 cM"
     gene            1..7246
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /note="NCK-associated protein 5"
                     /db_xref="GeneID:210356"
                     /db_xref="MGI:MGI:2686394"
     exon            1..316
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            317..445
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            446..519
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            520..583
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            584..717
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            718..805
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            806..958
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1027
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1066
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1186
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1378
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..5118
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            5119..5296
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            5297..5375
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            5376..5690
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            5691..5827
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     exon            5828..7213
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      7185..7190
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /note="hexamer: AATAAA"
     polyA_site      7213
                     /gene="Nckap5"
                     /gene_synonym="8430408F21; D130011D22Rik; E030049G20Rik;
                     Erih1; Erih2; Gm1548; Nap5"
                     /note="major polyA site"
ORIGIN      
        1 atgacacctg gatccccacc ttaaaagaca ccaaggaggg aagcctgctt gggagggtgt
       61 gagtttttcc tctctcttgt tgcctgtgga agctgagtgt tggctcggtg cccggtgtgg
      121 tactgcattc aaacgcccgc agaacacagg cgtgtttgtt aagcaagcca gtgatcaaaa
      181 actcctacag gaagatccga gaacccccca ggagccctcc tgggtagcac taggactttg
      241 gatggaatga gacagaaccc cggagcaggc taacggtggc ggagcaacca gctggcctgt
      301 ctgctatgcc ttttagtggc cgtggagaca gacgggggat tcttctaaat tgtaaaggaa
      361 aatacatcac tcacccatgg aggggaagag acagctggat agaagggact ttggtaaaag
      421 actctctctg gacagcagtc ttgtggaata catggactct aacaaatgca tcgagcacct
      481 gctggcacaa ctcagggagc aacacagaag tctctggcgg gagaagctgg ctgtggccag
      541 gctgcagaga gaagttgccc aaaggacaag ccaaggggcc atgcacgaga agctgataca
      601 tgagttggaa gaggaacggc acttgcggct acagagtgag gagcggctgc gggaggtgac
      661 cctggagtca gagcgcaaca ggatccagat gctcggcctg cagcagcagt tttccagaat
      721 ggaagaaact gtccgaagtc tgttgcagag ccaaggatct ccagagcaga aaaaggaaga
      781 acctgccaag atcacagcct accaggaagg actacctgat gaagagagaa aagagcaagc
      841 agcactgggt gatctccatg tggtggcagc tgatgaggac tcaagaagcg agcacagtag
      901 tgtggaggag ggaaaggaag acagcagact gctcctgaag agactgaagg ccctggaggc
      961 ggagaattca gcactggcac tggaaaacga gaatcagaga gaacagtatg agcgatgtct
     1021 tgatgaggta gccaaccaag ttgttcgagc tctactcact caaaaggatc tgagggagga
     1081 gtgtgtaaag ttgaaaacaa gagtgtttga cttggagcaa cagaaccgag cactcagcct
     1141 cctgttccaa cagcgagtca gaccagcttc tgatgtgctt ctccaggaac acctccagaa
     1201 tgcaaaatca ggaacccctg ccttgaaaca ctctggctca ggggttgtca tccctgatca
     1261 cctctgtcct cgcaacagct gcagcagtgg cagtgagcta tcgctgtcaa gcacctgcag
     1321 cgagtactcc agtggctcct cctacacgtg gcaagacagg aagctcattg ggaaaaggca
     1381 atcatcgcgg atctgggata aaagactaag tattgattct tcgctcccaa gtggcttcgc
     1441 cagccctgca gatgaactac ctccgacccg tatcaaagaa agccacattc tagagggact
     1501 gaggaagcta cagaagcgga aagtgttcct tgaatcacca tcattggtga taagcaaatg
     1561 gggttataaa gattgcatga actcgaatga agggatctat tcgccaggaa ttaaaaccag
     1621 cagcctcaag gagtgtccgc cctgccaacc gtctggcatg gggatcccct gccagaatct
     1681 ccatcagaca ttcatctatg atgcaaattc tcatgaggat gcacatgaag aactcccatc
     1741 ctcagccttg ccactaacat ctccgagcca gggctacaga atacagggca gtaaattgac
     1801 acacagtgtt tcagacagtc tgtttaactg ggagccacat aggaagtact ttgcagaagg
     1861 tacagcctca gtatatacca gagaaatgcc tgaaaggcta gctcgttgtg ctagccactg
     1921 ccccttggag aggaagctat gtcccagtat acacctgccc tgggtgcaaa gagacaggga
     1981 cccacacagc caagttcatg gccatgtgcc tctgaacctg cagctctcag ataccgatga
     2041 caatgagacc ctaaacgagc tacacataga gagcagtgat gagagaagcc cttcagacct
     2101 gtccttgact ggggacaccg acaagtccat ggagaaccta gaggtgggat tcagaaagtc
     2161 tgaaggtggc tctcgggaca tgggagaaga agcatgtccc acccacttag agactagccc
     2221 gaaggcattc agtttcatca agcaacaaag ggttgtcaag aggacctctt cggaagaatg
     2281 tgtcacggtc atatttgatg cagaaaatgg agagccagtg gaattcagct ctcaccaggc
     2341 tggagtcgtc actgtcacca gggatgaaat ttccatcagc tcagcccttg ctgggccctc
     2401 agaggaactc actgaacttt cacctcagga aattactcac ttccaggcag gagctactgc
     2461 aagagactgt ccttttctga agagacctga agaggagact gcgaaaaaca ttccaaaaga
     2521 tgaaaatcat attctcacag ctccgaatga cttcttcagc tcccagacta taataactca
     2581 gaattcccca agaccaaagc tcgccaaacc cacacagggg gtagcctggc agagtaattc
     2641 tagacctgtt ggaaacatgg gtgtctacac aaagcaaggt ctgacaaaaa tcccttccag
     2701 aggcaagtct tcacctcaga aatccaaact tgtggagtct atgcccacca tgctggtccc
     2761 ctccagtgcc ctagtgactc ctgaaaagac accagcatcc cctatgggga aactctcaca
     2821 atgtagaaag gcagagagcc ctggttctct ctgtgatgta cagccagaat cacacattcc
     2881 aaaacaccct gcccaggttc ctcatatccc caaaatttcc aataagaaga actgggttca
     2941 gtgccccagg agtcagactt cagggatcca gtcacggcat ctcatgggga gaagtgacag
     3001 tagtgaaatg aggtccaatg gctgtgtctc tgcgccacag acaagaatga ggtctccctc
     3061 ccctccaacc cctccaggga gatcagtgtc actcctggtt agacccagtt atgattaccc
     3121 accactacca tcacctgcca aacctgaaac tcagggccct ggagacgctg taagtccagg
     3181 gttgaaatcc ccgctgttga aaggatcctc tgctcctctt gtctcttcca gtccagtgat
     3241 gtcagaaata cagaagaaac catctgtggc ctccagaaag tctgccttcc ctccagctct
     3301 tccctcaacc caagcggtag tgcacaccag ataccctgaa cacatagcct ccagtccatt
     3361 tgctgtgacg acttcagggc ccccaaaagt ctctccaaaa agaggcatcc ctaaacctcc
     3421 ccctcaccat gcactaggaa ctgcccacat ggacacagac ttacagacac ccaagacttg
     3481 tccttcaagc tgtgaactgc tagaggtgac atcttgtaaa agcctgtctc cagggagaaa
     3541 aagacagttg agtgacagca ctgtgatgcc ccacaggcct tccttctcag gagtgaatga
     3601 gtccttgaca cctcaggtta acagtccatc ctcctcttcc tcatcctgta gaaaccaagg
     3661 gtcctcacaa ggtggccaga actctcccga gaaaggacct aaaactcgcc tcccagtagg
     3721 actcaaagtt ctcatgaagt ctcctcagtt gctcaagaaa acttccttgg taccagggaa
     3781 acaagaaaag gatagtttaa atgaagcatc tcgaagctgt gtagcagcaa acacgtctaa
     3841 tcctgaggac tccaaagacc ctgcaagtct ggagacctca agagatgaga gaaccacagc
     3901 cttactaggt gtgagaggtc ccgacagtct agctagagga cttgccttag actcaacaat
     3961 gccagaatcg ttagaatgta gcatctccag agatgatgga agagatgggg cagacagcag
     4021 agccataaaa agatccttct cctccagcaa gccacaccta aagcctgctc taggcatgaa
     4081 tggagccaaa gctcggagtc agagcttcag catccacttg ggagagaagc cttccacacc
     4141 cccaacagaa gggccaggca agattcgaac tcagattatc accaacacgg ctgaaagagg
     4201 caactccctc accagacaga atatctcaat ggaagggtcc ccaagcaaga ccccctctgt
     4261 ctcaacatct gataatctgc ccaatgctgg aaggcccctg ggaaacccct tttccaggca
     4321 gagttctctc tgtagcaccg gaagttctag cagccagcac ggaagcccaa gcaagttacc
     4381 cttgaggatg ctcacaaggc cggaaggact cctcactcct ggagtggaag accaacggct
     4441 ctctactcag gaagagtgtc ctgaaagagg tgtacatgag caatctagca gtgaccacca
     4501 taggcatcca tctcctcttt cagactgccc tcagttcctg cacgttccag ggaggatgca
     4561 gcgcccaagc aatttggaaa caagtgggat atctaagcta gaaacttctg gaaggcatcc
     4621 agatgcttct tcaactggga ctagtgtcgt gagcccagaa gcccccctct caccctccat
     4681 cgaagaaaag gtcatgttgt gcattcagga gaatgtggaa aagggccaag tgcagacaaa
     4741 gtctgcctct gtggaagtga agcccagggc agggccttcg ttcaccagct ggtttggttt
     4801 tcgaaagagc aggcttccag ctctcagtag caggagaatg gaagcttcca agagtaaagt
     4861 ggaaaagaaa gacacaaaac tgaaatctga gaggaaaaaa gaaaagaaga aagctgaagt
     4921 acaatcaaag atagaaaacg aactgagtag ggggaccaag aaggcagatg gtcagagtcc
     4981 agacgatggt ctgcaaagct cagagagtct gaaagtatcc caagacattt ataaccaaat
     5041 gaagttggag ccaaggaata gacccagccc tgctgtgtgc ccaacaaaag atgccttcat
     5101 gacagaactt ctaaacagag ttgataagag agcctcggta cagagagaga gtggatcaaa
     5161 gggtgtttcc tgcaggagcg tgttagaggg cacctcccag ggctcctgtt tcgccagcgg
     5221 ctctgtgagc actcaaggaa gtcaaaagaa aaacatcaaa accaaagtcg atatggaaaa
     5281 accaagagaa tccttggggg ccgaggtcaa tgaagatgta caagaagatg aagaagatag
     5341 agttgctgac actactctcc agagccacat gatagaatcc aactgccaga tgagaacact
     5401 ggacagcggg attggaacct ttcccctccc agactcagga aaccgctcag tgggacgata
     5461 catatgccag caggactctc cagaggacac tgatgccctc ctgcctctcc agccagccgc
     5521 ttccatggca tcctctgcca gagcccaaac ccttgaccgc gaagtgcctt cctccacaga
     5581 cagccagagc tccccggagt ccatgatcat ccattccata tctgacccca gcatgatggc
     5641 cagagagatg agagcctcac agagtcacct tcccaagcct acctcctcag gaaaacctag
     5701 ttttgaaaag caaaatggag cagagtcaaa ggctcacact ggcccatcat tcgaatatgc
     5761 tgaggatgca gtggcaagtg agcccctttc aggatggagg ggtgaagatg ctactactga
     5821 gacccaggaa ccgaaacaag ttgaagaaac aaaagaagat cctgagaata gattatctga
     5881 aatttccctg gagtcattca ataaatttag cagcaatact gtgattttat taggaaaaga
     5941 gaagtctcca agtgaggttg aaggacaaaa ggaagagaaa ggcaaaaaga cagaagtgtc
     6001 ttcgagtagc tccgaacggc ctggggtgga ccgcgtggag tctctgagtg actctctgta
     6061 tgacagtttc tcctcttgtg caagtcaagc atccaacgag gcctagagga gcatccttca
     6121 gtgagactcc tgcatgcatg gtgcactagg caaacagact ccagagaagc tgatagccag
     6181 tataccagag tttacttctc tcgtggactg atagagatcg cctcgactta ctgtgttttg
     6241 agaggattaa aaagcaaaat atgatggaga attctcaatg tttgcacttt tttgagtatt
     6301 tgtataaaag ctgtacattt ttttgggggg ggagagaaat tatatttgta gggggagaaa
     6361 gatagcaata aaaagagttg gcgccatgct cttgaaacga tgcattaagt tctagaagtt
     6421 gataatatat tttttaaaaa ccccagctga agattttgtg aacataatca tcttggtcct
     6481 caactcattt gtgcatatac tgtcaatgga agcgtggggc aggcaggaaa gccagagggg
     6541 tggaggtcac ctgttctgaa ggtctctctc gattgggtgg tccacttgcc acattgtctc
     6601 gaggaagatg tgatgatatg ggtgttctgt tgaagaatta gagtgtgagc actgattaga
     6661 tggcaccaga tgatgcggaa gggagcagat cttagcaggc ttcactccca acctcttcta
     6721 tcctctccat tgtatttctc acaattctga gtgtttgctg ttttcttttt aaatttccct
     6781 gcttttatat tattattaaa acctgggtac tctttgccat atcttaaaaa taaatgaatg
     6841 gttggtgcta tgaaactttc ttacttttta atatcctttt tttctattaa agactgttta
     6901 tatgggagga taaattctat tttaaaggtt atgtgtattt tttctagacg tgaactattt
     6961 ataattcctt ctgtacagaa gcctacagac caggcagact agagctatgt ttaggatttg
     7021 tgtggttacc ttagaacact tgtatcttta tagagtattg tatgaccagt gttattgtat
     7081 ttgtgcaatt tgttgtattt ggatttcatt accttaaatt caagctgcgt gtaaagtatc
     7141 ctccttgtct ttagaaaaaa ttcttttgtt tcatttcatt ttggaataaa ggtcttatca
     7201 caattacacc ctaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
