LOCUS       XM_006532430            4667 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NBR1, autophagy cargo receptor (Nbr1),
            transcript variant X1, mRNA.
ACCESSION   XM_006532430
VERSION     XM_006532430.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4667
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..4667
                     /gene="Nbr1"
                     /gene_synonym="mKIAA0049"
                     /note="NBR1, autophagy cargo receptor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 164 ESTs, 1046 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 49 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:17966"
                     /db_xref="MGI:MGI:108498"
     CDS             490..3474
                     /gene="Nbr1"
                     /gene_synonym="mKIAA0049"
                     /codon_start=1
                     /product="next to BRCA1 gene 1 protein isoform X1"
                     /protein_id="XP_006532493.1"
                     /db_xref="GeneID:17966"
                     /db_xref="MGI:MGI:108498"
                     /translation="MEPQVTLNVTFKNETQSFLVSDPENTTWADVEAMVKVSFDLNTI
                     QIKYLDEENEEISINSQGEYEEALKMANIKQGNQLQMQVHEGYHVVDEALPKNVVENQ
                     AAARTGKKPLAHYSSLVRVLGSDMKTTEEPAPEQCSSAPCDTDQPQDKPPDWFTSYLE
                     MFREQVVKETVEKLEQRLQEKLVLQKPLLSSSPTEVSMPISEETLFLPENQFSWHIAC
                     SHCQKRIVGVRYQCSLCPSYNICEDCEAGPYTHDTNHVLLKLRRPVVISSEPFFYSKY
                     SAPRLPAALEQVRLQKQVDKNFVKAEKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWN
                     SIHGLQSPKSPLGRPESLLQSNTLMLPLQPCAPVMPTLSAAFVDENLPDGTHLQPGTK
                     FIKHWRMKNTGNVKWNTDTKLKFMWGNLTLASTEKKDVLVPCLKAGHVGVVSVEFIAP
                     TLEGTYTSHWRLSHKGQQFGPRVWCSIIVDPFPSSESPDNVEGDRISSSKADDFSCEQ
                     EEAFLLAEEEIPLGEVTKQTEGTGASASQKTRRAASERELYIPSVDLLTAQDLLSFEL
                     LDINIVQELERVPHNTPVDMTPCMSPLPHDSPLIEKPGLGQIQEESEGAGFKAPPGFV
                     CLSDSTVSAKRKAETPASVEETEEDLSGTQFVCETVIRSLTLDAAPDHNPPCRQRSPQ
                     RELQLYSTEGQQPLVLPGFCRKDSSLKFALPEEGPRGDEREEIVHIVEEEVVEEEEEV
                     QDEEVQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGEPGIESGL
                     EPTEARERLPERESQPQEQSISDILTTSQPLDTVPLVPEVAGLPAALSRSAPCGQCES
                     SGVDSPGVDSPATMHEVPPAPDDIRGEPRGSTGLANSRQRSCDHSRHHNGSSIAGGLV
                     KGALSVAASAYKALFSGPPVTAQPIVSEDQTTALMAHLFEMGFCDRQLNLRLLRKHNY
                     NILQVVTELLQVNNNDWYSHRY"
ORIGIN      
        1 accagctgac ttctgcgcgc tagttccgcc cctcggcctg ggtgtttgtt attgttatgc
       61 ggttcagaga gcttctgtcc ctcccttgcc aacgcagcac tgaccaatcg gtagagaggt
      121 tattttgagg ggcagataga aagagccaat catcttgtgg aaaactccgg gaaacatggg
      181 actaggcccg gtctctgtcc gccatgttag attcaccccg cagggatagc aggcgagctg
      241 gccgcgaacg gtccttgcac tggccactgg caagcgcccc ccgtgggcgg aaagctgaaa
      301 aaacaaacaa accaaccaac ttgaacgtgc tggggagttg ctggggagtt gatgagccag
      361 cgtctgccta aattttacag ctcctaagaa ggaagaattg catttcaggc tgacctagaa
      421 ctcttggact tccattacca tcctgcatca acttctgagt aactgggact acagctccag
      481 ccagacagca tggaaccaca ggttactcta aatgtgactt ttaaaaatga aactcaaagc
      541 tttctggttt cggatccaga aaatacaacc tgggctgatg ttgaagctat ggtaaaagtt
      601 tcatttgatc tgaatactat ccagataaaa tacctggatg aggagaacga ggagatatcc
      661 atcaatagtc aaggtgaata tgaagaagca cttaagatgg ctaacattaa gcaaggaaat
      721 cagctacaga tgcaagtcca cgaagggtac catgttgtag atgaagcact ccccaaaaat
      781 gtggtagaaa accaagcggc tgccaggaca gggaagaagc cacttgcaca ttattcttca
      841 ctggtgagag tcttgggatc agacatgaag accacagagg agcctgcacc agagcaatgt
      901 tcttctgctc cttgtgacac agaccagcct caagacaagc ccccagattg gtttacaagc
      961 tacctggaga tgttccgaga acaagtggtt aaggaaacgg tggagaaact tgaacagagg
     1021 ttgcaggaga agcttgtcct ccagaagcca ctcctgagtt cctcacccac agaagtctca
     1081 atgcctattt cagaggaaac cctgtttttg ccagagaacc agttcagctg gcatattgct
     1141 tgtagccact gccagaagag gatcgttgga gtgcgctacc agtgtagcct atgcccatcc
     1201 tacaacattt gtgaagattg tgaagctgga ccatacaccc atgacactaa ccatgttttg
     1261 ttaaagctgc ggagacctgt tgtgatatcc tctgagccat ttttctactc caagtattcc
     1321 gctcctcgtc tgcctgctgc tttggaacaa gtcaggctcc aaaaacaggt ggacaagaac
     1381 tttgtgaaag cagaaaagca aaggttgcgg gctgagaaga aacagcggaa ggcagaggtc
     1441 aaagagctta aaaagcagct taaactccac aggaagattc atttatggaa ttcaatccat
     1501 ggacttcaga gtcccaagtc ccctttgggc cgacctgaga gcttgctgca gtctaacacc
     1561 ctgatgcttc ctttgcagcc ctgtgcccca gttatgccaa cactcagtgc agcatttgtg
     1621 gatgagaatt tgcctgatgg gactcatctt cagccaggaa ccaagtttat taaacactgg
     1681 aggatgaaaa acacggggaa tgtgaagtgg aacacagaca caaagctcaa gttcatgtgg
     1741 ggaaacttga ctctggcttc tacagagaag aaagatgttt tggttccctg cttgaaggct
     1801 ggccacgttg gggtcgtgtc tgtggagttc atcgctccaa ccttggaggg gacatacact
     1861 tcgcactggc gtctctctca caaaggccag cagtttgggc ctcgggtttg gtgcagtatc
     1921 atagtggatc cttttccttc ctctgagagc cctgataatg ttgaagggga caggatcagc
     1981 tcaagcaaag ctgacgattt ctcctgtgag caagaggaag cttttcttct agctgaagaa
     2041 gagattccat tgggtgaggt gacaaagcag acagaaggga caggagccag tgcctcacag
     2101 aagacaagac gcgctgccag tgaaagggag ctgtacattc catctgtgga cctcctgact
     2161 gcccaggacc tgctgtcctt tgagctgctg gatataaaca ttgtccaaga attggagaga
     2221 gtgccacaca acacccctgt ggatatgact ccctgcatgt ctcctctgcc acatgacagt
     2281 cctttaatag agaagccagg cttggggcag atacaggaag agagtgaagg ggcgggattt
     2341 aaagcacctc ctggctttgt atgtctttca gattccactg tatcagcaaa gaggaaagct
     2401 gagacccctg cttcggtcga agaaacagaa gaagacctga gtgggaccca atttgtatgt
     2461 gagactgtaa ttcgatccct taccttggat gctgctccag accacaaccc tccttgcagg
     2521 cagaggtccc cacagaggga attacagctg tattccaccg agggacagca gccacttgtg
     2581 ctgcctggat tctgcagaaa ggattcttcc ttgaaatttg ccttgcctga agaaggaccg
     2641 cgtggagatg agagggagga gattgtccac attgttgagg aagaagtcgt tgaggaagag
     2701 gaggaagtcc aagatgaaga agtccaaagt cagtcttctg cttcctctga agattatatc
     2761 atcatccttc ctgagtgctt tgataccagc cgccccctgg gggactccat gtacagctct
     2821 gcgctctccc agccaggcct ggagcgaggg gctgaaggcg aacctgggat cgagtctggg
     2881 ctggaaccaa ctgaggctag agagagactc ccagagaggg agagccagcc acaggagcag
     2941 agcatcagcg acatcctcac aacctcacag cctctggaca cggtgcctct agtccccgag
     3001 gtggcaggac ttccagcagc attgtccagg agcgcccctt gtggacagtg tgagtcatca
     3061 ggagtggatt caccaggagt ggattcacca gctaccatgc acgaagttcc cccagcccct
     3121 gatgacatca gaggagagcc cagaggctca acaggactcg caaacagcag acagaggagc
     3181 tgtgaccact caaggcacca caatgggagc agcattgctg gaggactggt gaagggggct
     3241 ttgtctgttg ctgcctctgc gtacaaggcc ctgttttctg ggccaccagt cactgcacag
     3301 cccatcgttt ctgaagatca gaccacagcc ctgatggccc atctctttga aatgggattc
     3361 tgcgacaggc agctgaacct aaggctgctg agaaaacaca attacaatat cctgcaggtt
     3421 gtgacagagc tccttcaagt gaataacaac gactggtaca gccaccgcta ttgaggactg
     3481 accttgtatt aaataactgc ctgccgctca gaggtggtct ctctgctgtc attgagtgtg
     3541 ggtggaagcc cttgcttgct ttttaatctg atgaatctat gtctctgaat tgtcaaaaca
     3601 gtacctgtta cagtattttt tggagcaaat caaaggccag aacttaaatt ttcactgtag
     3661 aaatgggatg aatggtagga agacagtttt caactcagct ggacagaact ctcgccgctg
     3721 tagtccgtgg aagcgagtaa cttggacttc cttagatcgc ttttccttct gcttgtattg
     3781 aaattgagta ttttcctttg gttcatgtgg atgtttttaa tgggctgtta aatattagtt
     3841 tggtttttgt tttttaaaga ttaaccttga atgtttccaa gaattattca cctagtttct
     3901 ataaccaatc gcaagcctca tagctacata aagacagcag atcaagaaag tcatgttcct
     3961 caaagactta gaaatgagga acactttgct ttcagaaggc ctagcaggaa cctggaagga
     4021 caggaggcat tcgggttaac ccacagcacc cactgagcag tgtctgtcaa agtaattttg
     4081 cataaatttt atttaaggag aatcctgggt agtgtgaaat attttgctaa tcctatgggg
     4141 ggggcacctg ttacagaaag ggaaagttag tagtcgtcct tttactgact gtcacagtgg
     4201 attggaagga caagcatgtg caaatactca tctcagtaag gtcgggtgtg ggtgaaagga
     4261 cacagaactg ctgctgactt tccgaatgtg tggaatcccc ttgtgaggta tccagcccta
     4321 gaaagccgag aacaggaagt aatgctttgg ggctaaccca cagaaaggtt agtttaccat
     4381 tagaatagat gggaagaagg ctctgtcaag agttctaggt ctcatttagt ttataaaggg
     4441 aagctttggg tccagatggt gaaagaaaag gcaacacaac actaaagatt ttattcatgt
     4501 ttgagaaaag gtatctgaac tccagctcaa aggggatagt taaaatagta ttatttaact
     4561 tagttggtat ttataataaa tggcgatctt aattactcat aatatgttta tttacaatct
     4621 aactcttgaa tgcttctaaa taaaccacaa ttcaaactgc aagccaa
//
