LOCUS       XM_030253610            4561 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus myb-like, SWIRM and MPN domains 1 (Mysm1),
            transcript variant X5, mRNA.
ACCESSION   XM_030253610
VERSION     XM_030253610.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030253610.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4561
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..4561
                     /gene="Mysm1"
                     /gene_synonym="C130067A03Rik; C530050H10Rik"
                     /note="myb-like, SWIRM and MPN domains 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 15 ESTs, 151 long SRA reads, and 95% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 17 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:320713"
                     /db_xref="MGI:MGI:2444584"
     CDS             91..2295
                     /gene="Mysm1"
                     /gene_synonym="C130067A03Rik; C530050H10Rik"
                     /codon_start=1
                     /product="deubiquitinase MYSM1 isoform X5"
                     /protein_id="XP_030109470.1"
                     /db_xref="GeneID:320713"
                     /db_xref="MGI:MGI:2444584"
                     /translation="MEAEEADVDVEGDVAAAAQPGNDESTASVFQDHYLDSTWRRENG
                     CLPWTLDSTISDENRAIIEKMLLEEEYYLSNKSLPGKFWVNQKEDNKKYTNSLQKSSK
                     AMVDSPAKPASHSVKWTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKSYARQYF
                     KNKVKWDVEKETPTQKSSSDLQVKNKDDRTKAWAAACLRGSADPCLNAVKIEKLSDDE
                     DVDITDELDELTSQTSQNSGSHLTLDVPNSKMYTTNQGELCQEGPLAKSSGESLQNVK
                     QGEGEACSSSEIASWAEKQKSTDKNSAELNEKYNKVVEEHTLHRGEVREEAKHSPSPE
                     PCERQDSSGNEMLLPPCQIEEENHEGEELKPPEQEVEIDRNVIQEEEKQAIPEFFEGR
                     QTKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAI
                     NFGCEQAVYNRPQPLDKVRAADRKDAEAAYQLAWRLQSMRTRRRRVRDPWGNWCDAKD
                     LEGQTFEHLSVEEMARRKEEEKCKPIKFSKASKLPKSSLDPFQLIPCNFFSEEKQEPF
                     QVKVAAEALLIMNLHAHVSMAEVIGLLGGRYSEADKVLEVCAAEPCNSLSTGLQCEMD
                     PVSQTQASETLALRGYSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMI
                     VSPYNRSNPLPYSQITCLVISEEVSPDGTYLLPWPYVAPALDQQERRDHQSF"
ORIGIN      
        1 aaggccccgc ctccggccct gggcccgccc ccggtcccgc cccgccgcat ctcgcgggat
       61 ctcgcgagta cgcctgcgtc aggtgcagtc atggaggcgg aggaggcgga tgtggatgtg
      121 gaaggagatg ttgcggcggc tgcacagccg ggaaatgatg aaagtacagc atcagttttt
      181 caagatcact atcttgattc aacgtggaga agggaaaatg gctgtcttcc ttggactctg
      241 gatagcacca tcagtgatga gaacagagct atcattgaga aaatgctgtt ggaagaagag
      301 tattatttat ctaataaatc acttccagga aaattctggg ttaatcaaaa ggaggataat
      361 aaaaaataca caaacagcct gcagaagtca tcaaaagcca tggtagattc tcctgcaaaa
      421 ccagccagtc attcagtaaa gtggacagta gaagagaaag agctgtttga acaaggactg
      481 gctaaatttg gccgaaggtg gaccaaaatc gcaacactac ttaaaagtcg cacagtttta
      541 caagtgaaga gttatgccag acagtacttt aaaaataagg taaagtggga tgtggaaaaa
      601 gaaacaccaa ctcagaagag cagcagtgat cttcaggtta aaaacaaaga tgacaggacg
      661 aaggcgtggg cagcagcctg tttaagggga agtgctgatc cctgcctgaa tgctgtaaag
      721 attgagaagt tatctgacga tgaagatgta gatatcacag atgagctgga tgagttgact
      781 tctcaaacat cacagaattc tggcagccat cttactttag atgttcctaa tagtaaaatg
      841 tataccacca atcaaggaga attatgccaa gaaggtccat tagctaaatc ttcaggagag
      901 tctcttcaga atgtgaagca aggtgaagga gaagcatgtt caagctcaga aattgcatca
      961 tgggctgaaa aacagaaaag tactgacaaa aactcagccg aattaaatga gaaatacaat
     1021 aaagtggtgg aagaacacac tctacacaga ggagaagtaa gagaggaagc caagcactcg
     1081 ccttctccag agccctgtga gaggcaggac tcaagtggaa atgaaatgct tttgcctcct
     1141 tgccaaattg aggaggaaaa ccatgaagga gaagagctta agccaccaga acaagaagtt
     1201 gaaatagata gaaatgtcat tcaagaagaa gaaaagcaag cgattcctga gttttttgag
     1261 gggcgccaaa ctaaaacacc agaacgctat ttgaaaatta gaaactacat tttggatcag
     1321 tgggaaatat gcaaaccgaa atacttaaat aagacctcag tacgtcctgg cctgaagaac
     1381 tgtggggatg ttaattgtat tggacggatt catacatacc tcgagttgat aggagcaatc
     1441 aattttggat gtgagcaggc agtatataac aggccacaac cacttgataa agtacgagcg
     1501 gccgacagaa aggatgcaga agcagcatac cagcttgcct ggcgcctgca gtctatgcga
     1561 acgaggagac gcagggtccg agatccatgg ggaaactggt gtgatgcaaa agacttagaa
     1621 ggacaaacat ttgagcattt gtctgtggag gagatggcaa gaagaaaaga agaggaaaag
     1681 tgcaaaccta ttaaattttc gaaagcttca aaacttccaa aaagctcact tgatcctttc
     1741 caactgatac cttgtaattt tttcagtgaa gaaaagcagg agccatttca ggtgaaagta
     1801 gctgcagaag cacttttaat aatgaatttg cacgcccacg tgtctatggc agaggtgatt
     1861 gggcttctag gaggaagata ctcagaagct gataaggtcc ttgaagtctg tgcagcagaa
     1921 ccatgtaaca gtctgagtac aggacttcag tgtgagatgg atcctgtatc acagacacag
     1981 gcctcagaaa ccttggctct tagaggctac agtgtcattg ggtggtacca ttctcatcct
     2041 gcatttgatc ctaatccatc tttacgagat attgacacac aagccaaata ccagagttac
     2101 ttctccagag gaggagcaaa attcattgga atgattgtta gtccatataa tcgaagtaat
     2161 cctttaccat attcccagat aacctgcttg gttataagtg aagaagttag ccctgatggt
     2221 acctacctgt taccgtggcc ttatgtcgcg cccgctctcg accagcaaga acgacgcgac
     2281 caccagtcct tctaacagca gtttattcag tcctgattct tcttgtttat atctcccccg
     2341 aaccctgggc ctctcactcc ttttatactc tctctcatcc acgcaccgca ggccacgccc
     2401 cctcgccagt cacgaggctt cagctaatca gggcagcagg ggcaaatctc caccaaattg
     2461 gattcacctg tatcctggta cacctgcgca gcactcaaga tgtttgtgtc ttatatgagg
     2521 aagtcaggtg caagtcatat gacttagctg cagtccctgg cgcctttggg actgccgcca
     2581 cacccgctcc ccacagcctt aaataaaagg aagaaatgta gagcaatgtt agagcaggca
     2641 gtgtatatac tgagcactgt gttcacaggc tgtacattct gggcactata aacatcacat
     2701 gcataagcag tgtgtctata ctgggcactg gagacattgt agtgcattaa acatggttct
     2761 catatcacga aaatagtttc ataaatgcaa tcttgttttc cctgctatgc catgtaaata
     2821 aagaaaaaac aaaaccataa agtcttctca ctcctgttga ctgctaatat atctttatat
     2881 atttaaatct gcagtgtttt ttctgcctat gtctcttaat gaaatttatt tattgttttt
     2941 gtattcctag taccaactag ttagcactga gtttttattg aatgaataat aataatatca
     3001 gtagtagtcc agaatgccct actgagtaca gcacataata cacataattt ttcaacttaa
     3061 ctcaaattta taaaggttat aaaagaaagc atcacaataa acttgccttt cctttaagtc
     3121 acatctcagt cttctgagtt ttgatcatga tcctctctat tctagtcatt tctaatacag
     3181 ttagttgata ctgggtacat gtgacttacg tttaaatatt ataatttaat aatttaaaat
     3241 gcatgtaatt ctgctcctga ccaaaatgat ttaataatga agcaaccaaa ataataggca
     3301 aaatatgcag aacagtattt tatttagaat ataactcagg ctgtgatctt tgagtcattt
     3361 gctttgcatt ttttagatcc catctggcac aagagttgaa gttgtctaga agctttgaga
     3421 tgactgtact tccctacttt taacccaggc tctactttag aatgtctctg atagctaagc
     3481 attttctgaa ctttgatcag ttacaaaata tacatattga ttagttatct gataccttgg
     3541 tggataaaaa tattctgaat gaaaggctgt ttttacttag gtgccttttt taaatagaat
     3601 ttttcttaac cacactacgt agttaagtac ggtttatcta tacatgtaat gttttttgtc
     3661 agccctaccc tgtagtattt attcccactt tcaacattaa ttaagaatag taattattca
     3721 actattttta tatcctggct ctgacattca ccatttattt tgttggactt atactctcac
     3781 ttgcctctga tatcttctgt taatggggaa caaaattacc ttgcttacag agtcagtact
     3841 tgaaaggatt gtagcatgca ccagggcttc agtaggtagc tactgtagct ggcagctgtg
     3901 ctctgtaggt aatccaggtg tgccaggtgt tgtcctcacc aaggcagact tgctcagtga
     3961 ccccgcacta tgtcattgct cttcacttgc aatgagagaa ataagaagag aggagaggag
     4021 atctgagaaa tgaaaagagc tctagttatc ctcaggcttg ctgtctcttt cctctcccaa
     4081 acacctctgt tttgtatatt gatagttagg ctggcctttg tttccttggg aaagtgccat
     4141 tgttttccta gtcaggcctg gggtcgtctc agttttaaaa tatgaatgcc acctgctgat
     4201 gcagcattgt cactggcttg atgacttgtt ctaaagatgc cttgctttgc tgagagcagt
     4261 cccaggttgt cactgacact gccctctact gctcagaaga ttcttggctt ggaagataac
     4321 tgagaggaca tcatgccttt ctacagagct gtcagaaaag gggcactgtt tactcttaat
     4381 tattagtaat agcttagcat aaacatgctt ggaggggcaa atatagtcag gcagtaaaca
     4441 ttcgatgcac gctcagtgtg ttcaaagagc ctaccaagct gtaatctaaa aacgttgaag
     4501 agaattttaa tcagaagggg actggagaaa tagttgatga aaatgtttct ctttaaactt
     4561 g
//
