LOCUS       NM_001415760            2986 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus MYCBP associated protein (Mycbpap), transcript variant
            1, mRNA.
ACCESSION   NM_001415760 XM_030245457
VERSION     NM_001415760.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645809.8.
            
            On Dec 29, 2022 this sequence version replaced XM_030245457.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-161               AL645809.8         43555-43715         c
            162-289             AL645809.8         36908-37035         c
            290-449             AL645809.8         36162-36321         c
            450-553             AL645809.8         35898-36001         c
            554-740             AL645809.8         34971-35157         c
            741-856             AL645809.8         34608-34723         c
            857-998             AL645809.8         34005-34146         c
            999-1114            AL645809.8         32339-32454         c
            1115-1230           AL645809.8         32137-32252         c
            1231-1342           AL645809.8         31623-31734         c
            1343-1532           AL645809.8         30484-30673         c
            1533-1720           AL645809.8         29927-30114         c
            1721-1867           AL645809.8         28756-28902         c
            1868-2257           AL645809.8         27805-28194         c
            2258-2379           AL645809.8         27253-27374         c
            2380-2495           AL645809.8         26430-26545         c
            2496-2641           AL645809.8         25851-25996         c
            2642-2812           AL645809.8         25506-25676         c
            2813-2986           AL645809.8         23727-23900         c
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 58.9 cM"
     gene            1..2986
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /note="MYCBP associated protein"
                     /db_xref="GeneID:104601"
                     /db_xref="MGI:MGI:2388726"
     exon            1..161
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..2914
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     AMY1-associating protein 1; AMY-1-binding protein 1"
                     /codon_start=1
                     /product="MYCBP-associated protein isoform 1"
                     /protein_id="NP_001402689.1"
                     /db_xref="GeneID:104601"
                     /db_xref="MGI:MGI:2388726"
                     /translation="MKAIKKESRLKMPTSKILENAESVKEKKRAKAPEQPTPPIQEEP
                     EPVSNVLQGDDILALAIKKEDLRKQHVPQFEETGEKPVVTQKFIIRKLKPKDSSKRVY
                     HLVAHPATPDAATKPLDYSGPHDSFLSSGQILPHQILGSLQDFKRIAVARGNTQLAKL
                     IHIQPCLMTLISAKEEPKPKPPKEEERPSPWAPPPQHNFLKNWRRHIALRKKQQEALS
                     KHLKKPASELLMHTGESYRKIQEEREVIDRALPTQHDGKATSWFWSPLEYLGDEMTGL
                     LMTKKKTQRGLVEPITHIRKPLSIQVETGLPAQKDAWYRYTWDRSLFLIYRRKELQSI
                     MAELDFSQQDIDGLEVVGHGKPFSSVTVEEHLPPEKIQKSSSEDTVFLDSLTNLSDMV
                     PMPILGPSLLFCGKPACWVRGSNPEDKKNIGIGVRLTFETLEGERTSSELTVVNNGTV
                     AIWYNWRRRPHQDFFQDLKQNKTQRFYFNNREGVILPGETKHFTFFFKSLNAGIFRES
                     WEFGTHPTLLGGAVLQVTLHAISLTQDIFMDERKLLETKLAAHEAITIAQSVLQDLLR
                     GISTPERTPSPVDAYLTEEDLFNYRNPRLHYQHQVVQNLHQLWQQYRKAKATQKETPS
                     LRTPVPLLLVEKASGSISPRNLVSEYSQLSPHQEMDTARKTRDFFLSLKSSIGKKSVA
                     RKSIMEELLVEEGPDRETTQRPWALKSISPPKWNLCLEDFRQAVMTFPEELQREDALI
                     QLNKAAMELCQEQKPLQSDLLYQMCLQLWRDVIDSLVSQSLWLRNLLGLPEKETVYLD
                     LPDEQGQKSPPVTESKVTSGKAGKEDRRGGAQEKKQLGTKDKDDKRGSKTPGKEDRPN
                     SKKLKPKDDKKVVKSASRDRLLSEDPPPDSTAPSQEPIDPLVMEKYTQRLHAEVYALL
                     DNLVTDVMVLADELSSTKNVEESLRFCS"
     exon            162..289
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            290..449
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            450..553
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            554..740
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            741..856
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            857..998
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1114
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1230
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1342
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1532
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1720
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1867
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1868..2257
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            2258..2379
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            2380..2495
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            2496..2641
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            2642..2812
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            2813..2986
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2961..2966
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /note="hexamer: AATAAA"
     polyA_site      2986
                     /gene="Mycbpap"
                     /gene_synonym="4932408B01Rik; AMAM-1; AMAP-1"
                     /note="major polyA site"
ORIGIN      
        1 gggatcgcgg cgggggctgc cgcgctgcgc agtcatctta ggggcgggga gcacagggcc
       61 aaggcaggta accccggacg gcaccatgaa ggccatcaag aaggaatccc gtctcaaaat
      121 gccaaccagc aagatcctgg agaacgcaga gagcgtcaaa gaaaagaagc gggcgaaggc
      181 acctgaacag cccactcccc ccattcagga agagcctgag cctgtcagca atgtcttaca
      241 aggagatgac attcttgcct tggccattaa aaaggaagac ttgaggaagc aacatgttcc
      301 tcagtttgaa gaaacaggag aaaagcctgt ggtcacacag aaatttatca tccgtaagct
      361 caaaccgaaa gactctagca aaagggtcta ccacttggta gcacatcctg ctactccaga
      421 tgccgccacc aagcctctgg actactccgg tcctcatgac agcttcttaa gcagtggcca
      481 gatcctccct caccagatct tgggaagtct ccaggacttt aaaagaatcg cggttgctcg
      541 agggaacacc cagctggcta agctgattca catccagccc tgcctgatga ccctcatctc
      601 agccaaagaa gagccaaagc caaagccccc caaggaggag gagagacctt ctccatgggc
      661 cccacctcct cagcacaact tcctaaagaa ctggagacgg cacattgcct tgcggaagaa
      721 gcaacaggaa gctctcagca agcacctgaa gaagccagcc agtgagctgt tgatgcatac
      781 cggggagagc tataggaaga tccaggagga gcgcgaggtc attgaccgtg cacttcccac
      841 ccagcatgac ggaaaagcaa ccagttggtt ctggagtcca ctggaatacc tgggtgatga
      901 gatgacaggt cttctcatga ccaaaaagaa aactcagcgt ggtctggtgg aacccatcac
      961 acacatcagg aagcccctct ccatccaagt ggagactgga ttaccagccc agaaggatgc
     1021 ttggtaccgc tacacctggg accggagtct gtttctgatc taccgacgca aggagctgca
     1081 gagtatcatg gcagagctgg atttcagcca gcaggatatt gatggcctgg aggtggtggg
     1141 ccatgggaag cccttctcat ctgtcacagt ggaagaacat ttgccacctg aaaagatcca
     1201 gaagagctcc tcggaagaca cggtatttct agactccttg accaacctct ccgacatggt
     1261 ccccatgcct attctcggcc cttcgctgct gttctgtggg aagccagctt gctgggtcag
     1321 aggcagtaac ccagaggaca agaaaaacat cggaattggt gtccgcctga catttgaaac
     1381 ccttgaaggg gagagaacgt cctcagaact gactgtggtc aataacggca cggtggccat
     1441 ttggtacaac tggcgaaggc ggccccacca ggattttttc caagacctaa agcaaaacaa
     1501 gacgcagagg ttttacttta acaaccggga aggtgtgatt ctgcccgggg aaaccaaaca
     1561 ctttaccttc ttcttcaagt ctctgaatgc tggcatcttc agggaatctt gggagtttgg
     1621 gacccaccct acactcctgg gaggtgctgt ccttcaggtc accctccatg ccatctcact
     1681 gacccaggac atttttatgg atgagaggaa gttgttggag acaaagctgg ctgcccacga
     1741 ggccatcacc attgcccaga gcgtgctgca ggacttactg aggggcatct ccacgccaga
     1801 gcgcacacca tccccggtgg acgcgtatct caccgaggag gacttgttca actacaggaa
     1861 tcctaggttg cattaccagc atcaagtggt gcaaaacttg caccagctgt ggcaacagta
     1921 caggaaggcc aaggcaaccc agaaggaaac ccccagcctc agaactccag tgccgttact
     1981 gttggtggag aaggcctcag gttcgataag ccccaggaac ctggtctcag agtactcgca
     2041 gctgtcaccg catcaggaga tggacaccgc caggaagact cgggacttct tcctgtctct
     2101 gaagtctagc ataggaaaga agagtgtggc acggaagagc attatggagg aactgctggt
     2161 ggaggagggt ccggacaggg agaccaccca gcgcccctgg gctctgaaaa gcatttcccc
     2221 gcctaagtgg aacctgtgtc tagaggactt cagacaggca gtgatgacct tccccgagga
     2281 gctccagaga gaggatgccc tcatccagct caataaggcg gcaatggagc tgtgtcagga
     2341 gcagaagcca ctgcagtcgg acctcctata ccagatgtgt ctgcagctgt ggcgagacgt
     2401 gattgacagc ctggtaagcc agtccctgtg gctaagaaat cttctgggcc tgcctgagaa
     2461 ggagacggtt tatttggatc ttccagatga acaaggtcaa aaatcccctc cagtcacaga
     2521 gtcgaaggtg acaagtggga aagctgggaa ggaggatcgg agagggggcg cacaggagaa
     2581 gaaacaactg ggtaccaaag acaaagatga taaaaggggt tccaagacac cagggaaaga
     2641 ggaccgcccg aatagcaaaa aactgaagcc aaaagatgac aagaaagtgg taaagtctgc
     2701 aagccgggac aggctgctct cagaagatcc tccccctgac agcacggcac cctcccagga
     2761 gcccatagac cccctggtca tggagaaata tacccagcgg ttgcacgctg aggtctatgc
     2821 gttgctggac aacctggtga cagatgtgat ggtcctggct gatgagctca gctctacaaa
     2881 gaatgttgaa gagtctttac gtttttgcag ctgattcttg gacccaagct tcctcctggg
     2941 aagatggttt gaaaaaagtc aataaagaat ctttaggttc ctacca
//
