LOCUS       NM_001281979             882 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus major urinary protein 9 (Mup9), mRNA.
ACCESSION   NM_001281979
VERSION     NM_001281979.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Charkoftaki,G., Wang,Y., McAndrews,M., Bruford,E.A., Thompson,D.C.,
            Vasiliou,V. and Nebert,D.W.
  TITLE     Update on the human and mouse lipocalin (LCN) gene family,
            including evidence the mouse Mup cluster is result of an
            'evolutionary bloom'
  JOURNAL   Hum Genomics 13 (1), 11 (2019)
   PUBMED   30782214
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Logan,D.W., Marton,T.F. and Stowers,L.
  TITLE     Species specificity in major urinary proteins by parallel evolution
  JOURNAL   PLoS One 3 (9), e3280 (2008)
   PUBMED   18815613
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 882)
  AUTHORS   Chamero,P., Marton,T.F., Logan,D.W., Flanagan,K., Cruz,J.R.,
            Saghatelian,A., Cravatt,B.F. and Stowers,L.
  TITLE     Identification of protein pheromones that promote aggressive
            behaviour
  JOURNAL   Nature 450 (7171), 899-902 (2007)
   PUBMED   18064011
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT571246.8.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CA455948.1, CA456604.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-162               CT571246.8         63278-63439         c
            163-296             CT571246.8         62806-62939         c
            297-370             CT571246.8         61974-62047         c
            371-481             CT571246.8         61226-61336         c
            482-583             CT571246.8         60784-60885         c
            584-629             CT571246.8         60575-60620         c
            630-882             CT571246.8         59533-59785         c
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 32.84 cM"
     gene            1..882
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /note="major urinary protein 9"
                     /db_xref="GeneID:100038948"
                     /db_xref="MGI:MGI:3782918"
     exon            1..162
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..609
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /note="major urinary protein 2; major urinary protein 6;
                     MUP 6; Alpha-2U-globulin; Group 1, BS6; major urinary
                     protein 2-like"
                     /codon_start=1
                     /product="major urinary protein 6 precursor"
                     /protein_id="NP_001268908.1"
                     /db_xref="CCDS:CCDS51187.2"
                     /db_xref="GeneID:100038948"
                     /db_xref="MGI:MGI:3782918"
                     /translation="MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILAS
                     DKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTY
                     DGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHG
                     ILRENIIDLSNANRCLQARE"
     exon            163..296
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /inference="alignment:Splign:2.1.0"
     exon            297..370
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /inference="alignment:Splign:2.1.0"
     exon            371..481
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /inference="alignment:Splign:2.1.0"
     exon            482..583
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /inference="alignment:Splign:2.1.0"
     exon            584..629
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /inference="alignment:Splign:2.1.0"
     exon            630..882
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      857..862
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /note="hexamer: AATAAA"
     polyA_site      882
                     /gene="Mup9"
                     /gene_synonym="Gm14076; Mup2; Mup6"
                     /note="major polyA site"
ORIGIN      
        1 ggagtatagc cacaatcaca agaaagacgt ggtcctgaca gacagacaat cctattccct
       61 accaaaatga agatgctgct gctgctgtgt ttgggactga ccctagtctg tgtccatgca
      121 gaagaagcta gttctacggg aaggaacttt aatgtagaaa agattaatgg ggaatggcat
      181 actattatcc tggcctctga caaaagagaa aagatagaag ataatggcaa ctttagactt
      241 tttctggagc aaatccatgt cttggagaat tccttagttc ttaaattcca tactgtaaga
      301 gatgaagagt gctccgaatt atctatggtt gctgacaaaa cagaaaaggc tggtgaatat
      361 tctgtgacgt atgatggatt caatacattt actataccta agacagacta tgataacttt
      421 cttatggctc atctcattaa cgaaaaggat ggggaaacct tccagctgat ggggctctat
      481 ggccgagaac cagatttgag ttcagacatc aaggaaaggt ttgcacaact atgtgaggag
      541 catggaatcc ttagagaaaa tatcattgac ctatccaatg ccaatcgctg cctccaggcc
      601 cgagaatgaa gaatggcctg agcctccagt gttgagtgga gacttctcac caggactcca
      661 ccatcatccc ttcctatcca tacagcatcc ccagtacaaa ttctgtgatc tgcattccat
      721 cctgtctcac tgagaagtcc aattccagtc tatccacatg ttacctagga tacctcatca
      781 agaatcaaag acttctttaa atttttcttt gatataccca tgacaatttt tcatgaattt
      841 cttcctcttc ctgttcaata aatgattaac cttgcactta aa
//
