LOCUS       XM_006520151            5017 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus metadherin (Mtdh), transcript variant X2,
            mRNA.
ACCESSION   XM_006520151
VERSION     XM_006520151.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000081.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006520151.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="15"
     gene            1..5017
                     /gene="Mtdh"
                     /gene_synonym="2610103J23Rik; 3D3; 3D3/Lyric; AEG-1;
                     D8Bwg1112e; Lyric"
                     /note="metadherin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 mRNAs, 9 ESTs, 4150
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 37 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:67154"
                     /db_xref="MGI:MGI:1914404"
     CDS             570..2210
                     /gene="Mtdh"
                     /gene_synonym="2610103J23Rik; 3D3; 3D3/Lyric; AEG-1;
                     D8Bwg1112e; Lyric"
                     /codon_start=1
                     /product="protein LYRIC isoform X2"
                     /protein_id="XP_006520214.1"
                     /db_xref="GeneID:67154"
                     /db_xref="MGI:MGI:1914404"
                     /translation="MAARSWQDELAQQAEEGSARLRELLSVGLGFLRTELGLDLGLEP
                     KRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKRRSPPRKREEAAPPTPAPDDL
                     AQLKNLRSEEQKKKNRKKLPEKPKPNGRTVEVPEDEVVRNPRSITAKQAPETDKKNEK
                     SKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVLTDSGSLDS
                     TIPGIENIITVTTEQLTTASFPVGSKKNKGDSHLNVQVSNFKSGKGDSTLQVSSRLNE
                     NLTVNGGGWSEKSVKLSSQLSEEKWNSVPPASAGKRKTEPSAWTQDTGDTNANGKDWG
                     RNWSDRSIFSGIAAWSSVARGMSASQQNSASFASLTLNSAVSGSTAEPVSQSTTSDYQ
                     WDVSRNQPYIDDEWSGLNGLSSADPSSDWNAPAEEWGNWVDEDRASLLKSQEPISNDQ
                     KVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSHTQDTEDLEKDTREELPVNTSKAR
                     PKQEKACSLKTMSTSDPAEVLIKNSQPSLKLTGNLQNK"
ORIGIN      
        1 gcaggcctca cacctgaatc cctctcagca tccagaaagc ccgagcctga aggagttcca
       61 ccgtcagatt tctagctccc gcttcgcaag ctccgagtcg ccccaagcct ccaaacccac
      121 acagctcaag gagaccccac tccaagacta gagtccgccc ggccccgccc atcgccccat
      181 gtgacgcatg ccccgcccac agcctccacg tgacccgacc ggcctccgcg cgcagcgtgg
      241 atcgcggccg gagccgccat tgttccgccg ggggaggaca gcgggtcctg gcgctggcgc
      301 cccgacgccg cttagcggcc gcctctggag acactctgtc cccgccgccc cgtgtcctcc
      361 tggtggcggc ggcgtgaggc cggctgcgga gactgggaac ctttggctct ccccgtggcg
      421 gcggcggccc tctatcccct actccggcgt gagggttggc cgcgatgcgc tcggcctgag
      481 gtgtcgcggc cctgtcgcct cccacgactg ttccagcggc ggctccgctc cccggcgtca
      541 tcccgcgagt ctctctgacg ggagggaaga tggctgcacg aagctggcag gacgagctgg
      601 cccagcaggc cgaggagggc tctgcccggc tgcgggagtt gctctcggtc ggcctaggtt
      661 ttctgcgcac ggagttgggc ctcgacctgg ggctagagcc gaagcggtac ccgggctggg
      721 tgatcctggt gggcaccggc gctctcgggc tgctcctgct cttccttcta ggttacggct
      781 gggccgcggc ttgcgccggc gcccgcaaga agcgaaggag cccgccccgc aaacgggagg
      841 aggcggcccc gccgactccg gcccccgacg acctagccca gctgaagaat ctcagaagcg
      901 aggagcaaaa gaagaagaac cggaagaagc ttcctgaaaa gcccaaacca aatggacgga
      961 ctgttgaagt acccgaggat gaagttgtta gaaatccccg aagtataact gcaaaacaag
     1021 caccagagac agacaagaaa aatgaaaagt caaagaaaaa taagaagaaa tcaaagtcag
     1081 atgctaaagc agtgcaaaac agttcacgcc atgatggaaa ggaagttgat gaaggagcct
     1141 gggaaactaa aattagtcac agagagaaac gacaacagcg taaacgtgat aaagtgctga
     1201 ctgattctgg ttcattggat tcaactatcc ctgggataga aaatatcatc acagttacca
     1261 ccgagcaact tacaactgca tcatttcctg ttggttccaa gaagaataaa ggtgattctc
     1321 atctaaatgt tcaagttagc aactttaagt ctggaaaagg agattctaca ctgcaggttt
     1381 cttcaaggct gaatgaaaat cttactgtca atggaggagg ctggagtgaa aagtctgtaa
     1441 aactctcctc acaattgagt gaggagaagt ggaactctgt cccacctgct tctgcaggca
     1501 agaggaaaac agagccatcg gcttggactc aagacactgg tgacactaat gcaaatggga
     1561 aagactgggg aaggaattgg agtgatcgct caatattttc tggcattgct gcttggtcta
     1621 gtgtggctag ggggatgagt gcctctcaac agaactctgc ttcttttgca tctctcacac
     1681 ttaactctgc tgtctctgga tctactgctg agccagtttc tcagtctacc acttctgatt
     1741 atcagtggga tgttagccgt aatcaacctt atatcgatga tgaatggtct gggttaaatg
     1801 gtttgtcttc tgctgaccct agctcagact ggaatgcacc agcagaggag tgggggaact
     1861 gggtagatga agatagagct tcacttctga agtcccagga accaatttct aatgatcaaa
     1921 aggtttcaga tgatgataaa gaaaaagggg agggagctct tccaactgga aaatctaaaa
     1981 agaaaaagaa gaaaaagaag aagcaagggg aagataactc tcacacacag gacacagaag
     2041 acctagaaaa ggacactaga gaagagcttc cagtgaatac ctcaaaagcc cgaccaaaac
     2101 aggagaaagc ttgttccctg aagaccatga gcactagtga cccagctgaa gtactcatca
     2161 aaaatagcca gccaagtctg aaactaactg ggaatctcca aaacaaataa aaaagaagaa
     2221 aaaggccaga cgggaaacgt gaattttttt ttcctgaatt ggacatgtgt ttacaaacac
     2281 tgtcttgaag attatgctgt ttatgcaata atttgtgaac atgtacagag ttttatataa
     2341 atttaaacca atttttaaaa caaaactgaa cacaaccacc ataaaatgga atcaaaggaa
     2401 agttaattta tgaaataaag aggtcaacag aatacacagt gctggaagac acttgggaga
     2461 gtcttttcaa ttgaacgaga atgatcgtaa tttaagacta ttatcctggt tttacaacag
     2521 ttacctgttt acaacagact gtgccctgtc tcctctgcag ctgaggaata atgaatggat
     2581 tctgattaga gagaaggctg ccgtgaggcc agtaggcaag tccttggatc ttatgcacga
     2641 ccttagacca tttgaatctg ttttatgctt aaatcaaagt gctttgatca aatgtataat
     2701 ctgccatatc tttacatatt tgttgtagca gtttgtatta aaagaatcac aagtgcaaat
     2761 taaaaggtca tttatcattt atttaactaa actgtcttgg tttagtttac agttctttaa
     2821 aagttctaaa ttaaaacatt aaaaaatgca attgacagac acttgtatga cttacaaagt
     2881 tatttttgat agtcttaaca ttacttgaat tattcaaaat aacagtatat tttaaattaa
     2941 gaaaggtaaa tatattattt gtttgataca ttaagactga gactaacaat gctcttgttt
     3001 atgatttgaa aagttttcag gcaaatccaa cttagtgttt ttcctttccc tagcaatttt
     3061 ccagtgtcaa ctcttagttg ctagtaattt ttttacctta aaaatgaagt aattcgcaac
     3121 ttttgagcat atgacggaga atgcaaaagt agtcagacag ctttaattga tattgtggag
     3181 acctccggtt atcaggaata cattttttta ctgccttaac ctcctgtagt gagtagaata
     3241 tgcatcagtt tcttgaaggg gattcgtgtt tttataagaa ttttcatgta actattgcaa
     3301 ttgtggttaa aaacagaaag gaacattttc tgcttgaaac tgtgttgatt tgaatgacgt
     3361 atgatctgtc accattttca ggcactgtgt gatccctagg aaagtggcag gcctctctgt
     3421 aactgttaat agtgcatgct cggccatgta cactgtaaat agcctttacc aaacgtgttt
     3481 gacaaggacc ataattaaca tcactttagt aaattgtgat ttttttaaaa aaagccatga
     3541 tttattgatg tgagtggctt gttttcatgt ggcgccagaa atgaacctgt ttaaaagcta
     3601 taaccaatgg tactgatcta tccattaaat actgtcctta aactgtagtt taatagtatt
     3661 gtcaactagg aaagctaaaa tggtttttgt tctgttgaag actggcctta ttaatggaca
     3721 gctttcctca gaagtgatta acaacttttt tattgggtgt taacatctgt ttcaagaaca
     3781 tggcagtatg tttacatgtc gtcagaagtt ttctttgaat ggaatttcta aattaattta
     3841 cttgtttaaa taaattcaga actgggtagc attgttttta tttgcttcac tattgaggtg
     3901 aataagagct gatgtgccac aaatggagcc ttcagatggc tgctttgagc ttcgtgttcc
     3961 ctcaggggat gccaagatat gtctcaagga gagattaatg aggggtttgt aattacagag
     4021 tgtgccaagg tcagtgctca caagtttaat tgaactctct caactctacc tcactgttcc
     4081 ttttccttat aattctctgg gctaggtcaa atcagaaact ttatttttcg gttcagtatc
     4141 tcccgattca atcacttgta ggaggtggta actacactta gcagtaagaa tatcaccttt
     4201 ttgaagagat gtgtattatg ggagtggaag cacagcgata cactgggtag gtcagtgtgg
     4261 aagtcgcctc tgtgccttcc ttctcgctgg cttgtgagcc aggcccccct cccccccaac
     4321 ccccacgccg gtagaaggag gcaggtatat gagtcaaaat ccagttctct taaaatcgtt
     4381 gctctttacc tctctataga tctttgtgtg gcagggcagt gatttttttt tttttttttt
     4441 tgtcactgaa cagaggaact ggcttctgtc atcaactcag aaaactctga tgccacctgt
     4501 ttccctgaaa taggctctct gaaaagcctt tctgttgtgg agcagggcgt ggccatgtca
     4561 gagttctcca actgcattat acctataccc taaattgaga aacaaacagt tgagagagtc
     4621 caaaaataaa agttgaaata tcattgatgt aattaccatg tttcatttgt gcatgcattt
     4681 tattggggat gggaggttgg aataatttat ccaaatctaa tggtattatt tcataggcta
     4741 atccagtttg tatttgagtt aaagatccca gagtgtagta attaattgca gcgtttggtt
     4801 tttcttaatt aaaagtagtc ctctattaat atagtgtgaa atatcaaaat ttaggattta
     4861 agtttaaggt ctaatggcta ttttaaagtt tttctgtaaa ttctttgcac aaactagaat
     4921 tggaattgct ttcaaaagac ttggggaatg aaaatatgtc atgtgtaaga tgcactgagt
     4981 gttgtaaata aaacagacca tttttgtttt gtttaaa
//
