LOCUS       NM_026138               3948 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus MTCL family member 3 (Mtcl3), mRNA.
ACCESSION   NM_026138 XM_125551
VERSION     NM_026138.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3948)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3948)
  AUTHORS   Coulpier,F., Le Crom,S., Maro,G.S., Manent,J., Giovannini,M.,
            Maciorowski,Z., Fischer,A., Gessler,M., Charnay,P. and Topilko,P.
  TITLE     Novel features of boundary cap cells revealed by the analysis of
            newly identified molecular markers
  JOURNAL   Glia 57 (13), 1450-1457 (2009)
   PUBMED   19243017
REFERENCE   3  (bases 1 to 3948)
  AUTHORS   Kawaguchi,A., Ikawa,T., Kasukawa,T., Ueda,H.R., Kurimoto,K.,
            Saitou,M. and Matsuzaki,F.
  TITLE     Single-cell gene profiling defines differential progenitor
            subclasses in mammalian neurogenesis
  JOURNAL   Development 135 (18), 3113-3124 (2008)
   PUBMED   18725516
REFERENCE   4  (bases 1 to 3948)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CD355864.1, AK030682.1, AK018139.1 and AC153912.8.
            
            On Jan 5, 2007 this sequence version replaced NM_026138.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164131,
                              SAMN01164132 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-531               CD355864.1         158-688
            532-2728            AK030682.1         405-2601
            2729-3506           AK018139.1         1259-2036
            3507-3948           AC153912.8         189860-190301       c
FEATURES             Location/Qualifiers
     source          1..3948
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 16.52 cM"
     gene            1..3948
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /note="MTCL family member 3"
                     /db_xref="GeneID:67412"
                     /db_xref="MGI:MGI:1914662"
     exon            1..440
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /inference="alignment:Splign:2.1.0"
     exon            441..1630
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /inference="alignment:Splign:2.1.0"
     CDS             536..3373
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /note="protein SOGA3; SOGA family member 3; microtubule
                     cross-linking factor 3"
                     /codon_start=1
                     /product="microtubule cross-linking factor 3 precursor"
                     /protein_id="NP_080414.2"
                     /db_xref="CCDS:CCDS35875.1"
                     /db_xref="GeneID:67412"
                     /db_xref="MGI:MGI:1914662"
                     /translation="MSQPPSGGAAPAATSASAAAAATEARMHPEGCSRKQQRAQSPAR
                     PRDNSLRQTAGATRSPLGVGPKLNSVRQQQLQQQQQQGNKITGRSTSGTGSRGLGGGA
                     EKAVPSIPKGAVPGAVQPAPGAEGSPAAILASVSFRRSGQPEEAPREIESGPSKVGEP
                     PPLGGVGGGGEGGGAGGGPGDREGGAPQPPPPRGWRGKGVRATQRGSSVAEGVSPSPP
                     TAATSKTPGPGSRNSGSGSTGSGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQ
                     MHTKNGGGGSRSSPVAGAPAICEPLVVPSSSPMAAAAEGPQQSAEGNGSGGAMQAAAP
                     PSSQPHSQQLQEQEDMQEEMEKLREENETLKNEIDELRTEMDEMRDTFFEEDACQLQE
                     MRHELERANKNCRILQYRLRKAERKRLRYAQTGEIDGELLRSLEQDLKVAKDVSVRLH
                     HELENVEEKRTTTEDENEKLRQQLIEVEIAKQALQNELEKMKELSLKRRGSKDLPKSE
                     KKAQQTPTEDDNEDLKCQLQFVKEEAALMRKKMAKIDKEKDRFEHELQKYRSFYGDLD
                     SPLPKGEAGGPPSTREAELKLRLRLVEEEANILGRKIVELEVENRGLKAELDDLRGED
                     FNGSSNPLMREQSESLSELRQHLQLVEDETELLRRNVADLEEQNKRITAELNKYKYKS
                     SGHDSSRHHDNAKTEALQEELKAARLQINELSGKVMQLQYENRVLMSNMQRYDLASHL
                     GIRGSPRDSDAESDAGKKESDDDSRPPHRKREGPIGGESDSEEVRNIRSLTPTRSFYP
                     TPGPWPKSFSDRQQMKDIRSEAERLGKTIDRLIADTSTIITEARIYVANGDLFGLMDE
                     EDDGSRIREHELLYRINAQMKAFRKELQTFIDRLEVPKSADDRGAEEPISVSQMFQPI
                     ILLILILVLFSSLSYTTIFKLVFLFTLFFVL"
     exon            1631..1855
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..2014
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /inference="alignment:Splign:2.1.0"
     exon            2015..2086
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /inference="alignment:Splign:2.1.0"
     exon            2087..3262
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /inference="alignment:Splign:2.1.0"
     exon            3263..3948
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3915..3920
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /note="hexamer: AATAAA"
     polyA_site      3935
                     /gene="Mtcl3"
                     /gene_synonym="6330407J23Rik; Soga3"
                     /note="major polyA site"
ORIGIN      
        1 tctttcttct ttaagcaacc actccggtta cttctctcct gtcttccctt caatcccgcc
       61 ctctttccag cccagtccgg tgaggtcagc tcatgaatac cgctgcactt cctggggaag
      121 agtctggcac tgcttggcac cccgggtatt gcctgctgca tttgcagccc agccagccaa
      181 gcaccgccgg ctaggagtca actcccagag ctctaagtct ttgtggttgt cgcctttgtt
      241 cggagaaaca gagtgggtgt ggatcccgtg caagcaagcg cgcccagaag aaattcgcct
      301 ataacactac ggaagctggg aagttgaact ttctctgaaa ggtagaaaaa taaagtcgga
      361 ggtctccggc ttcctggaag caaaagccac tgcagagaag tgagatcttc tggatttcta
      421 aagacacgaa gagaaacggg cttacacagg aaggttggtg acagaaagga gagaagagga
      481 tgatctagag atggacgctt ccaagtggca tccagtaggt tctttctaga ctgccatgag
      541 tcagccaccg tccgggggcg ctgccccagc cgcaacctca gcttctgcgg ccgccgcagc
      601 cacggaggct cgcatgcacc cggagggctg cagcagaaag cagcagcgag ctcaatcacc
      661 cgctaggcct agggacaatt ctcttcgtca gaccgccggg gccacgcggt ccccgcttgg
      721 ggtcggccct aagctcaatt ctgttcggca gcagcagctg cagcagcagc aacagcaggg
      781 taacaagata accggtcgga gcacctctgg gaccggctcc agaggactcg gaggcggggc
      841 ggagaaggcg gtgccctcca tacccaaagg ggctgttccc ggagctgtcc agcccgcgcc
      901 tggtgctgaa gggtcccccg cggcgatcct ggcctctgtg agcttcagga ggtccggaca
      961 gccggaagag gcaccccggg aaatagaatc cgggccctcg aaagtcgggg aacctcctcc
     1021 gctcggggga gtaggagggg gcggggaagg aggaggagcc ggtggtggcc cgggggaccg
     1081 ggaggggggc gctccgcagc cgccgccgcc caggggttgg cgagggaaag gcgtccgcgc
     1141 aacgcagagg ggtagcagcg ttgcggaggg agtctcccct tcaccaccca ccgctgctac
     1201 gagcaaaacc cccggcccag gtagcagaaa ctctggtagc ggcagcacag ggagcggcag
     1261 cggtggtgga gggagctact ggaaggaggg atgtctgcag tctgagctca tccagttcca
     1321 tctcaagaag gagcgggcgg cagcggcggc ggccgcggct cagatgcaca ctaaaaacgg
     1381 tggcggcggc agccgcagtt ccccagtcgc cggcgctcca gccatctgtg agccccttgt
     1441 agtcccctcc tcctccccaa tggcggctgc agccgagggc ccccagcaga gcgccgaggg
     1501 caacggtagc ggcggggcca tgcaggcagc tgctccccct tcgtcccagc cgcactcgca
     1561 gcagctccaa gagcaagaag atatgcagga ggagatggag aagctgaggg aagagaacga
     1621 gactctcaag aacgagatcg atgagctgag gaccgagatg gacgagatga gggatacttt
     1681 cttcgaggag gatgcctgtc aactgcagga aatgcgccat gagttggagc gagccaacaa
     1741 aaactgccgg attctgcagt accgcctccg caaagccgag cgcaaaaggc tccgctacgc
     1801 gcagactggg gaaattgatg gcgagctgtt gcgcagcctg gagcaggatc tcaaggttgc
     1861 aaaggatgta tctgtgagac ttcaccatga attagaaaat gtggaagaaa aaaggacaac
     1921 aacagaagat gaaaatgaga aactgaggca gcagctaatc gaagttgaaa ttgcaaagca
     1981 agctttacag aacgaactgg aaaaaatgaa ggagctatcc ttaaaaagaa gaggaagtaa
     2041 agatttgcca aaatctgaaa aaaaggctca gcagacaccc acagaggacg acaatgagga
     2101 tctcaagtgc cagctacagt tcgttaagga agaagctgcc ctgatgagaa agaaaatggc
     2161 caagattgat aaagaaaagg acagatttga acacgaactc cagaaataca gatccttcta
     2221 tggggactta gacagtcctc tacccaaagg agaagcaggg ggacctccca gcaccaggga
     2281 ggccgagctc aagttgcggc tgcggctggt ggaggaagag gccaacatcc tgggcaggaa
     2341 aatcgtggaa ctggaggtgg agaacagagg cctgaaggcg gaactggatg acctgcgggg
     2401 cgaagacttc aatggctctt ccaaccctct catgagggag cagagcgagt ccttatcgga
     2461 gctgcgacag cacctgcagc tcgtggaaga cgagaccgag ctgctgcgga ggaacgtggc
     2521 tgacctcgag gagcagaaca aacgcatcac tgcggagctc aacaagtaca agtacaagtc
     2581 cagcggccat gacagctcgc ggcaccatga caatgccaag accgaggccc tgcaggagga
     2641 gctgaaggca gcgcgcctgc agatcaatga gctgagcggc aaggtcatgc agctgcagta
     2701 tgagaaccgc gtgctcatgt ccaacatgca gcgctacgac ctggcctcac acctgggtat
     2761 ccgtggcagc cctcgcgaca gcgatgctga gagcgatgcg ggcaagaagg aaagcgatga
     2821 tgactcccgg cctccccatc gcaagcgcga agggccaatc ggtggtgaga gcgactcaga
     2881 ggaggtgcgg aacatccgct ccctcacgcc cacccgctcc ttctacccca cacccgggcc
     2941 ctggcccaag agcttctcag atcggcagca gatgaaggac atccgctccg aggccgagcg
     3001 cctgggcaag accatcgatc ggctcatcgc agacacgagc accatcatca cagaggcacg
     3061 catctacgtg gctaatgggg acctgttcgg actgatggac gaggaggatg acggcagtcg
     3121 tatccgagaa cacgagctgc tctaccgcat caacgcgcag atgaaggcct tccgcaagga
     3181 gctacagacc ttcatcgacc gcctggaggt gcccaaatct gcggatgacc gaggagcaga
     3241 ggagcccata tccgtgagtc agatgttcca gcccatcatt ctgcttatcc tcatcctcgt
     3301 cttgttctcg tccctgtctt acaccacaat atttaaactt gtcttccttt ttacactgtt
     3361 ttttgtactg taaattttcc atcgtttgct gtccgttgta gtgttttcag ttgtttttat
     3421 tttgtccacc cttcaagaca agacataaaa gaagtatcat ttctgtagta gctgatgctg
     3481 taaacaaaaa aaaaaaaaaa aaaaaaacac tgaagactgc acatctctgt aaaaaaagac
     3541 acaactcatc ttacactgtc aaattcacta ggaaacccca gcgaccaaag tgtttcaggt
     3601 aaggaaaagt gagttatcag agttctgtgg agctcgtctt tctctgcctt tctttatacc
     3661 tttctttgtt ttgcactctt gagtcatagt tgactggctg actgtgaaaa atggacaaag
     3721 tctcataatt attctgtagg aattgagtat tattttacac ctggaaaatt tcagctggtt
     3781 gcattttcaa attcatgtag aggcattaat tataagtcaa tgtagatgat ttataaatta
     3841 tctctgttat aaattatgta gatttgtaag catgctgtta ctcatgttag acaaaaagga
     3901 aaacatcaat gtctaataaa tatctgttga aaatatgaaa tgagaaaa
//
