LOCUS       NM_019880               1946 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus mitochondrial carrier 1 (Mtch1), transcript variant 1,
            mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_019880 XM_991703
VERSION     NM_019880.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Nacarino-Palma,A., Gonzalez-Rico,F.J., Rejano-Gordillo,C.M.,
            Ordiales-Talavero,A., Merino,J.M. and Fernandez-Salguero,P.M.
  TITLE     The aryl hydrocarbon receptor promotes differentiation during mouse
            preimplantational embryo development
  JOURNAL   Stem Cell Reports 16 (9), 2351-2363 (2021)
   PUBMED   34478649
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Mao,G., Tan,J., Gao,W., Shi,Y., Cui,M.Z. and Xu,X.
  TITLE     Both the N-terminal fragment and the protein-protein interaction
            domain (PDZ domain) are required for the pro-apoptotic activity of
            presenilin-associated protein PSAP
  JOURNAL   Biochim Biophys Acta 1780 (4), 696-708 (2008)
   PUBMED   18291114
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162182.2.
            
            On Mar 19, 2018 this sequence version replaced NM_019880.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC023135.1, AK009623.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-466               AC162182.2         52277-52742
            467-551             AC162182.2         57302-57386
            552-658             AC162182.2         59312-59418
            659-736             AC162182.2         59711-59788
            737-794             AC162182.2         60084-60141
            795-846             AC162182.2         60367-60418
            847-906             AC162182.2         61408-61467
            907-1051            AC162182.2         63898-64042
            1052-1099           AC162182.2         66204-66251
            1100-1167           AC162182.2         66367-66434
            1168-1243           AC162182.2         66620-66695
            1244-1946           AC162182.2         67431-68133
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 15.23 cM"
     gene            1..1946
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /note="mitochondrial carrier 1"
                     /db_xref="GeneID:56462"
                     /db_xref="MGI:MGI:1929261"
     exon            1..466
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     CDS             146..1315
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /note="isoform 1 is encoded by transcript variant 1;
                     mitochondrial carrier-like protein 1; mitochondrial
                     carrier homolog 1"
                     /codon_start=1
                     /product="mitochondrial carrier homolog 1 isoform 1"
                     /protein_id="NP_063933.1"
                     /db_xref="CCDS:CCDS28596.1"
                     /db_xref="GeneID:56462"
                     /db_xref="MGI:MGI:1929261"
                     /translation="MGASDPEVAPWAPGGAAGMAGAGAGAGARGGAPAGVEARARDPP
                     PAHRAHPRHPRPAAQPSARRMDGGPGAPGSGDNAPTTEALFVALGAGVTALSHPLLYV
                     KLLIQVGHEPMPPTLGTNVLGRKVLYLPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNA
                     LSTVTRGSMKKVFPPDEMEQVSNKDDMKTSLKKVVKETSYEMMMQCVSRMLAHPLHVI
                     SMRCMVQFVGREAKYSGVLSSIGKIFKEEGLLGFFVGLIPHLLGDVVFLWGCNLLAHF
                     INAYLVDDSVSDTPGGLGNDQNPGSQFSQALAIRSYTKFVMGIAVSMLTYPFLLVGDL
                     MAVNNCGLRAGLPPYSPVFKSWIHCWKYLSVQGQLFRGSSLLFRRVSSGSCFALE"
     exon            467..551
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            552..658
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            659..736
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            737..794
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            795..846
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            847..906
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1051
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1099
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1167
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1243
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1244..1946
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1921..1926
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /note="hexamer: AATAAA"
     polyA_site      1946
                     /gene="Mtch1"
                     /gene_synonym="2310034O17Rik; PSAP"
                     /note="major polyA site"
ORIGIN      
        1 ggcccgggag caccaaggaa caacactcgc ccgcccgcca tgccccctcg ccccgcggcg
       61 tgagtggtgc tgccaggacc ctccccttga cgttcggggc gtggccagca ccacgtgacg
      121 gggagtgacc tccacgcctg gcgccatggg ggcttcggac ccggaagtgg cgccttgggc
      181 tcccggcggc gccgcgggga tggcgggagc cggagctggt gcaggagctc ggggcggcgc
      241 gccggccgga gtcgaggccc gcgctcggga cccgccaccc gcgcaccgcg cgcaccctcg
      301 ccatcctcgg cccgcggctc agccgtcggc gcgcaggatg gacggcggcc cgggcgcccc
      361 gggctccggg gacaacgccc cgaccaccga ggcgctgttc gtggcgctgg gcgcgggcgt
      421 gacggctctc agtcacccgc tgctctacgt gaagctgctg atccaggtgg gtcatgagcc
      481 gatgcccccc acccttggga ccaatgtgct ggggaggaag gtcctctacc tgccgagctt
      541 cttcacctat gccaagtaca ttgtgcaggt ggatgggaag atagggctct tccggggcct
      601 gagcccccgc cttatgtcca acgccttgtc cactgtgacc cgcggcagca tgaagaaggt
      661 tttccctcca gatgagatgg agcaggtttc caacaaggac gacatgaaga cctcactcaa
      721 gaaagttgtg aaggagacat cgtatgagat gatgatgcag tgtgtatcgc gaatgctggc
      781 ccatccctta cacgtgatct cgatgcgatg catggtgcag tttgtgggac gggaggccaa
      841 gtacagtggt gtgctgagtt ctattgggaa gatcttcaag gaagaggggc tgctgggatt
      901 cttcgttggc ttaatccctc acctcctggg cgatgtggtt ttcttgtggg gctgtaacct
      961 gctggcccac ttcatcaatg cctacttggt ggacgacagc gtgagtgaca ccccaggggg
     1021 gctgggaaac gaccagaatc caggttccca gtttagccag gccctggcca tccggagcta
     1081 caccaagttt gtgatgggga ttgcagtgag catgctgacc taccccttcc tgctcgttgg
     1141 agatctcatg gcagtgaaca actgtgggct gcgggctgga ctccctccgt attcccctgt
     1201 gttcaagtcc tggatccact gctggaagta cctgagtgtg cagggccagc tcttccgcgg
     1261 ctccagcctg cttttccgcc gggtgtcatc ggggtcatgc tttgccctgg agtaacctaa
     1321 gctgcccgac caaacattta tggggtctta gcctacccct ggtgaggacc catcatctca
     1381 gatgcccaag ggtgactcca gcccagcctg gcttcatgtc catatttgcc atgtgtctgt
     1441 ccagatgtgg gctggtggag gtgggtcacc tgggacctgg ggaagcctgg gggagcagtg
     1501 ttggggtggc atccccttcc tgcctagagg tactggagtc catcttgtac tcaggcagag
     1561 gcaggctgca gaggcaaacg tcactcagtg gcaaggcttc cctgcacctc tagcccagct
     1621 catcctgcca gtcagccaga agcacccccg ccccccactt cctgctttgt aaattgggcg
     1681 ccatcacacc tgggccatgg gaggctggag ctatgttccc aacactaatt ttcttataca
     1741 agggtggtgc cttctcctga ataggaaatc atgttctcct cagaccatcc cctcatctgc
     1801 ttgtctgtgc tggtgacgcc aggtgtgagg gttcagtcac tgtgctgggt gcgaatacgc
     1861 acaggttaca taggccgaca tctagtcctc ccctcgtggt aagatagacc catctcctcg
     1921 aataaatgta ttggtggtga tttgga
//
