LOCUS       NM_001379391            2097 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus metastasis associated 3 (Mta3), transcript variant 8,
            mRNA.
ACCESSION   NM_001379391 XM_017317213
VERSION     NM_001379391.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Yan,L., Jin,W., Zhao,Q., Cui,X., Shi,T., Xu,Y., Li,F., Jin,W.,
            Zhang,Z., Zhang,Z., Tang,Q.Q. and Pan,D.
  TITLE     PWWP2B Fine-Tunes Adipose Thermogenesis by Stabilizing HDACs in a
            NuRD Subcomplex
  JOURNAL   Adv Sci (Weinh) 8 (16), e2102060 (2021)
   PUBMED   34180153
REFERENCE   3  (bases 1 to 2097)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2097)
  AUTHORS   Burgold,T., Barber,M., Kloet,S., Cramard,J., Gharbi,S., Floyd,R.,
            Kinoshita,M., Ralser,M., Vermeulen,M., Reynolds,N., Dietmann,S. and
            Hendrich,B.
  TITLE     The Nucleosome Remodelling and Deacetylation complex suppresses
            transcriptional noise during lineage commitment
  JOURNAL   EMBO J 38 (12) (2019)
   PUBMED   31036553
REFERENCE   5  (bases 1 to 2097)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2097)
  AUTHORS   Miccio,A., Wang,Y., Hong,W., Gregory,G.D., Wang,H., Yu,X.,
            Choi,J.K., Shelat,S., Tong,W., Poncz,M. and Blobel,G.A.
  TITLE     NuRD mediates activating and repressive functions of GATA-1 and
            FOG-1 during blood development
  JOURNAL   EMBO J 29 (2), 442-456 (2010)
   PUBMED   19927129
REFERENCE   7  (bases 1 to 2097)
  AUTHORS   Boon,A.C., deBeauchamp,J., Hollmann,A., Luke,J., Kotb,M., Rowe,S.,
            Finkelstein,D., Neale,G., Lu,L., Williams,R.W. and Webby,R.J.
  TITLE     Host genetic variation affects resistance to infection with a
            highly pathogenic H5N1 influenza A virus in mice
  JOURNAL   J Virol 83 (20), 10417-10426 (2009)
   PUBMED   19706712
REFERENCE   8  (bases 1 to 2097)
  AUTHORS   Roche,A.E., Bassett,B.J., Samant,S.A., Hong,W., Blobel,G.A. and
            Svensson,E.C.
  TITLE     The zinc finger and C-terminal domains of MTA proteins are required
            for FOG-2-mediated transcriptional repression via the NuRD complex
  JOURNAL   J Mol Cell Cardiol 44 (2), 352-360 (2008)
   PUBMED   18067919
  REMARK    GeneRIF: These results demonstrate the importance of FOG-2/MTA/RbAp
            interactions for FOG-2-mediated transcriptional repression and
            further define the molecular interactions between the FOG
            repression motif and the NuRD complex.
REFERENCE   9  (bases 1 to 2097)
  AUTHORS   Le Guezennec,X., Vermeulen,M., Brinkman,A.B., Hoeijmakers,W.A.,
            Cohen,A., Lasonder,E. and Stunnenberg,H.G.
  TITLE     MBD2/NuRD and MBD3/NuRD, two distinct complexes with different
            biochemical and functional properties
  JOURNAL   Mol Cell Biol 26 (3), 843-851 (2006)
   PUBMED   16428440
REFERENCE   10 (bases 1 to 2097)
  AUTHORS   Simpson,A., Uitto,J., Rodeck,U. and Mahoney,M.G.
  TITLE     Differential expression and subcellular distribution of the mouse
            metastasis-associated proteins Mta1 and Mta3
  JOURNAL   Gene 273 (1), 29-39 (2001)
   PUBMED   11483358
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC155160.4 and AC155636.3.
            
            On Apr 1, 2020 this sequence version replaced XM_017317213.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4261173.1,
                                           SRR9219381.110370.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               AC155160.4         22231-22332         c
            103-170             AC155160.4         20050-20117         c
            171-264             AC155160.4         13809-13902         c
            265-391             AC155636.3         153350-153476       c
            392-455             AC155636.3         137888-137951       c
            456-573             AC155636.3         136129-136246       c
            574-676             AC155636.3         128792-128894       c
            677-776             AC155636.3         125199-125298       c
            777-965             AC155636.3         116035-116223       c
            966-1040            AC155636.3         109829-109903       c
            1041-1099           AC155636.3         107470-107528       c
            1100-1221           AC155636.3         102763-102884       c
            1222-1370           AC155636.3         100004-100152       c
            1371-1593           AC155636.3         99041-99263         c
            1594-1680           AC155636.3         91669-91755         c
            1681-1827           AC155636.3         87208-87354         c
            1828-2097           AC155636.3         76900-77169         c
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 54.53 cM"
     gene            1..2097
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /note="metastasis associated 3"
                     /db_xref="GeneID:116871"
                     /db_xref="MGI:MGI:2151172"
     exon            1..102
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            103..170
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            171..264
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            265..391
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            392..455
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            456..573
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            574..676
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            677..776
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            777..965
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1040
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            1041..1099
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1221
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1370
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1593
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            1594..1680
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            1681..1827
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     exon            1828..2097
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2055..2060
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /note="hexamer: TATAAA"
     regulatory      2075..2080
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /note="hexamer: AATAAA"
     polyA_site      2087
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
     polyA_site      2097
                     /gene="Mta3"
                     /gene_synonym="1110002J22Rik; mKIAA1266"
                     /note="major polyA site"
ORIGIN      
        1 agcggcggcg gtcgaggctg aggcggcggc ggcgggcggg gctcggctcg ggctccgcgg
       61 gcgggcgggc ggacatggcg gccaacatgt accgggtcgg agactacgtt tattttgaga
      121 attcctccag caacccgtac ctcatcagac ggatagagga gctcaacaag actgcaagtg
      181 gcaatgtgga agcaaaagtc gtctgctttt acagaagacg ggacatctcc aacacgctta
      241 tcatgctcgc cgacaagcat gctaaagaaa ctgaggagga gtcggagacg ccagttgagg
      301 ccgacttgac ggagaagcag aagcaccagc tgaaacacag ggagctcttt ctgtcgcgcc
      361 agtacgagtc actgcctgcg acacatatca gggggaagtg cagcgtggcc ctgctgaatg
      421 agacagaatc cgtgttgtca taccttgaca aggaggatac cttcttctac tcactggtat
      481 acgacccttc agtgaaaaca ttattggctg acaaaggtga aatcagagtg ggcccaaagt
      541 accaagctga cattccagac atgctaccag aaggagactc agatgagagg gaacaatcaa
      601 aattggaagt taaggtttgg gaccccaata gcccacttac ggatcgacag attgaccagt
      661 ttttagttgt agcccgtgcc gtgggaacat ttgcccgagc cctggactgc agcagctccg
      721 tgaggcaacc cagccttcac atgagtgcag ccgcagcctc ccgagacatc accttgtttc
      781 atgccatgga cacactgtac aggcacggct atgacctcag cagcgccatc agtgtgctgg
      841 tgccgctcgg agggccagtc ctctgcaggg acgagatgga ggagtggtcg gcctctgaag
      901 cctgcctatt cgaagaagca ctggaaaaat acggcaaaga tttcaacgac attcgtcagg
      961 actttctccc gtggaaatcc ttgactagca tcattgaata ttattacatg tggaaaacta
     1021 ctgacagata cgtgcagcag aagcgcctaa aggccgcaga agccgagagc aaactgaaac
     1081 aagtgtacat cccgacttac aaaccaaatc ccaaccaaat ctccagcagc aacggcaagg
     1141 ctggcactgt gaatggagct gtggggaccc agtttcagcc ccagagcgcc ctcctagggc
     1201 gagcctgcga gagctgctac gccacacagt ctcatcagtg gtattcctgg ggcccaccta
     1261 acatgcagtg tagactctgc gcgacctgtt ggctgtattg gaaaaagtat ggaggtctga
     1321 aaatgcctac ccagtcagac gaagagaagt ctcccagccc gactgcagag gacccgcgcg
     1381 caagaagcca catgtcccgg caggccttgc agggcatgcc ggtccggaac accggaagcc
     1441 ccaagtctgc agtgaagacc cgccaagctt tcttccttcg tactacgtat ttcacaaaaa
     1501 ttgctcgtca ggtctgcaaa agcaccctgc ggctgcggca ggcagcgaga cggccgtttg
     1561 ttgctattaa ttatgctgcc attagggcag aatatgcaga cagacatgcc gaactttctg
     1621 gaagcccact gaaaagcaga agcaccagga aacctttgtc gtgtatcatt gggtatttag
     1681 agatccatcc cgcaaagaaa cctaatgtaa ttcggtctcc accaagcctg caaactccag
     1741 ctaccaagag gatgctcgcc gctccgaatc acacatctct gagcattctg gggaaaagaa
     1801 actacagcca tcacaatggt ctagatgggc cagaacgatg gctaagcagg taaaggcgct
     1861 gccaccaagc cggtgacctg agtttgatcc ctgggaccct catggtgaaa ggagagaacc
     1921 gactccttca agtgccctct gacctccaca cgtgcactgt ggtacgcaca tgcctacaca
     1981 cacacacaca cacacacaca cacacacaca cacacacaca cagattaata aaatgtaatg
     2041 aaattttata aaaatataaa aaatatttaa aaataataaa atgtaatgaa aattgtc
//
