LOCUS       XM_006509312            5727 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus macrophage scavenger receptor 1 (Msr1),
            transcript variant X2, mRNA.
ACCESSION   XM_006509312
VERSION     XM_006509312.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006509312.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5727
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..5727
                     /gene="Msr1"
                     /gene_synonym="MRS-A; MSR; MSR-A; Scara1; Scvr; SR-A;
                     SR-AI; SR-AII"
                     /note="macrophage scavenger receptor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 8 ESTs, 5 long SRA reads, 5 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:20288"
                     /db_xref="MGI:MGI:98257"
     CDS             53..1417
                     /gene="Msr1"
                     /gene_synonym="MRS-A; MSR; MSR-A; Scara1; Scvr; SR-A;
                     SR-AI; SR-AII"
                     /codon_start=1
                     /product="macrophage scavenger receptor types I and II
                     isoform X2"
                     /protein_id="XP_006509375.1"
                     /db_xref="GeneID:20288"
                     /db_xref="MGI:MGI:98257"
                     /translation="MTENQRLCPHEQEDADCSSESVKFDARSMTASLPHSTKNGPSLQ
                     EKLKSFKAALIALYLLVFAVLIPVVGIVTAQLLNWEMKNCLVCSLNTSDTSQGPMEKE
                     NTSKVEMRFTIIMEHMKDMEERIESISNSKADLIDTERFQNFSMATDQRLNDILLQLN
                     SLISSVQEHGNSLDAISKSLQSLNMTLLDVQLHTETLNVRVRESTAKQQEDISKLEER
                     VYKVSAEVQSVKEEQAHVEQEVKQEVRVLNNITNDLRLKDWEHSQTLKNITFIQGPPG
                     PQGEKGDRGLTGQTGPPGAPGIRGIPGVKGDRGQIGFPGGRGNPGAPGKPGRSGSPGP
                     KGQKGEKGSVGGSTPLKTVRLVGGSGAHEGRVEIFHQGQWGTICDDRWDIRAGQVVCR
                     SLGYQEVLAVHKRAHFGQGTGPIWLNEVMCFGRESSIENCKINQWGVLSCSHSEDAGV
                     TCTS"
ORIGIN      
        1 attctatagg atctacagca ccctgtgact tgcaacatat ctgcttcctt tgatgacaga
       61 gaatcagagg ctctgccctc atgaacaaga ggatgctgac tgcagttcag aatccgtgaa
      121 atttgacgca cgttcaatga cagcatccct tcctcacagc actaaaaatg gcccctccct
      181 tcaggagaag ttgaagtcct tcaaggctgc cctcattgct ctctacctcc ttgtgtttgc
      241 agtactaata cctgttgttg gaatagtaac agctcagctt ttgaattggg aaatgaagaa
      301 ctgcttagtt tgttcactta acacaagtga cacatctcaa ggtcctatgg aaaaagaaaa
      361 taccagtaaa gtggaaatga gatttacaat tatcatggaa cacatgaagg acatggagga
      421 gagaatcgaa agcatttcaa actcaaaagc cgaccttata gacacggaac gcttccagaa
      481 tttcagcatg gcaactgacc aaagacttaa tgatattctt ctgcagttaa attccttgat
      541 ttcgtcagtc caggaacatg ggaattcact ggatgcaatc tccaagtcct tgcagagtct
      601 gaatatgaca ctgcttgatg ttcaactcca tacagaaaca ctgaatgtca gagtccgtga
      661 atctacagca aagcaacagg aggacatcag taaattggag gaacgtgtgt acaaagtatc
      721 agcagaagtc cagtctgtga aagaagaaca agcgcacgtg gaacaggaag taaaacagga
      781 agtgagagta ttgaacaaca tcaccaacga cctcagactg aaggactggg aacactcaca
      841 gacactgaaa aacatcacct tcattcaagg gcctcctgga ccccaaggtg aaaagggaga
      901 cagagggctt actggacaaa ctggtccacc tggtgctcca ggaataagag gtattccagg
      961 tgttaaaggt gatcggggac aaattggctt ccctggaggt cgaggaaacc caggagcacc
     1021 aggaaagcca gggaggtcgg gatctcctgg acctaaagga caaaagggag agaaggggag
     1081 tgtaggcgga tcaacccccc ttaagacagt tcgactggtt ggtggtagtg gagcccatga
     1141 gggccgagtg gagatcttcc accaaggcca gtggggcaca atctgtgatg atcgctggga
     1201 tatacgggct ggacaagttg tctgccggag tctaggatac caagaagttc tagctgtgca
     1261 caagagagct cactttggac aaggtactgg tccaatatgg ctgaatgaag tgatgtgttt
     1321 tggaagagaa tcatctattg agaactgtaa aatcaaccag tggggagtac taagctgttc
     1381 acattcagaa gatgctgggg tcacttgtac ttcataatgt atcatatttt caatggcatt
     1441 tatgaaattg caattatgaa accatttttg ttgccctgct ccactaaaat cattttaatg
     1501 aatagtaaat ggattcacaa tattggataa aagaaaggga atattagaaa tgagtgggaa
     1561 taagtcttaa acacatcaaa ctttatgtca atagataagg gattcaaatt tcttgcaaag
     1621 ttaatgtaga ttgtcaaatt gacataattt tcaaatgccc aggaagacaa aaatatgttt
     1681 atttatatga gggcatttcc agcgaggttt attcaaaggt agcatcattc tatgggcaca
     1741 ggatgcagac agaaataaaa ggataaagag agtgtggcac catcattaat ccctctctgc
     1801 ttcctgactg tgaacacaat gtcattatct atatcatgct tctgtcacca agatggacca
     1861 ctcaaatcca cgaatcaaaa taagttctgt cttctcaagt ttcatttagg gcaatgaggg
     1921 aaaaagctaa cagaaaaaaa atgttttgtt ttattttgtt ttgttttacc agaagtgagg
     1981 ttgtaactat cataaacttg aggacaattt gttaaattgt tgaattaatt tgcgaagagt
     2041 agagaaaaaa atcagagcca tagactatag gtgatctaaa atggtatcag cagaacttaa
     2101 taggatattc tgatagaaat ttgaattttt agattggcaa ataaatagaa aaatggataa
     2161 acaaataaaa tgaaaacact aaagctcagt ttccagaggc ttcaggatga aataagaatt
     2221 gtatcaagaa ttaaaaaaag gtattcacgt cacatgctgg caatgactct gacttcattc
     2281 tactcatatc ctgagacttg gagtaagacc atgagataag cttctttaat gttaaaactt
     2341 caagatataa tagaatcggg ctgtagcatt gctacaagtc tctgttctta ctcatatatg
     2401 cagtggcaaa gagcagcaag agaggaggaa gatatattaa ctctgctgtt ttaggaagaa
     2461 ataagcaagg ctggtttaaa gttgctgaca aagagaacaa agttatgatt gttaaagagg
     2521 ttagaaaaat taatgagaaa cctcaccctt tgcagaagaa aattataatg ggccttggtg
     2581 gcaaaaccat tgaaaggctc caatgtatac aaaatgcaaa tttatttgaa aggataaaag
     2641 ttaaactgga aattctgttc aagggttctc tgctaaaaag aaattgccca gagaagtatt
     2701 tgtcctagaa tcagccacca atgtccagag acacctttgt agctgtgcta gaaaaatccc
     2761 caactctatt tcaagatagt agcagaactt acaaacctaa tccacatggt ataaaataaa
     2821 agagggattg attcacaaag atttacaata gatgccagaa agatactgag gtcagaaaat
     2881 gtgtttcaga gtcagtttcc ccataaagaa ttccctagag gacactgtat gaagctataa
     2941 aggtgaacct aagttgaagt agggctgcag gaaccagaaa tatcccgtga gacaagtttc
     3001 atgtagagag tggaacttgt tcaagaagaa gttgaagtgt tctgagatag cagaaataga
     3061 ttttccaggt gtcagagtat tgtagaagtt caaaggattc cttcaggaac ccatgtgccc
     3121 aacaccagat tatatgattt cggtatttct ctaattgttc tttcctcact atgattcatt
     3181 ttgttgtttt tggactgggg atgttcattc tgtaggacta tgtactgtaa gtatgcaaca
     3241 tgtaggtttt aaaaatagac attcacagtt aagagactgt ctgattctca gaaggggttc
     3301 tgaacttcta ttttgaacaa ttttgaaatt cttatgactt tagtgaatct ctgaagacac
     3361 actaaatgta ttttacacta tgagattaat gtgagacttt agggaccagg ggtggaacgt
     3421 tgtaatttaa atgatgtgtt tggatgttaa tttgacaaga ctggatatgt gatggttaac
     3481 attactcgta aagttattgg gatttagaaa atccagcata tacactgcta gccatctctt
     3541 gagaacattt ccaaagagaa ttaactgaga agggaagacc tgaatttggt gactccatct
     3601 tactatttgg agtttcagca ccaaatgaaa atagaaaaga aggtagagaa cagatgttca
     3661 tttctttgtt tcctgatgtt acccatgggc tcatgatcct gtcatcttgc ctccttgcag
     3721 tgatggacta taccccaatc acttgccaga agaaatccac cattccttaa gttgatctta
     3781 tcaattgtct tgtacaacaa tgagaaaagt aaggaagaca ctttctgagc ttttaagtgg
     3841 aaaatttaaa ataatgatgc attaagtgaa tacttttaaa tatgaaattt ctacaaatga
     3901 gaagagagta gagaagatag aagtcctctc atactaggaa cacaggaaga gttttttgga
     3961 ttttgaaact tagatacaat agatagaata gagacttgca gaactgtgtg tatgtgctgg
     4021 gctgggttct cttcagctta ccttttaaag taggatgaca tttaagactt cactgctaaa
     4081 ctttgcttta tgagggcaat actatgcaga gattgaatca tatattctca gattttaaat
     4141 gagtattata aagcataaaa ctattgtatt gctatgtgat ttcttttttt ctacaaaaat
     4201 gtcagatacc aaaaatacaa ggggcattat tgtattcagt ttcaaaactg tagaagcaaa
     4261 tgtgactctt aaagttcaat gatgttccct gaatcaaaca aaaatatatg agaaatacat
     4321 agtggaataa ttttaggtaa taaagagact gaaatatagt ggtaaccatc tatgaggaat
     4381 ctctccagtg ccatacaact tcaagcaaac ttcctggaaa atatttcttc tgttaatcac
     4441 aaaaaagtct ttgatgcttc attttttaaa acagatggtt aatattaatg atgttgttgt
     4501 atttgtttcc ttaaatagca aaataaccat tcccactgtg aaaatataat gctagaatga
     4561 agagagaaca tccctattaa tctggataaa tagtgactag gaatttcaag tatttctctg
     4621 acacttggca tgccataaat cccagttggc tgctagagtg attagataga agtggtagtt
     4681 tgggaaggtt aatgaaaaaa agaagaatga aggagtgaag agaaggaggg aaagtgaatg
     4741 agagaatatg aagtaaattt caagaaataa catatttgct aatcatcacc gttacatgtt
     4801 aaacattttg agtaagtcag tttggtatac cttgaagtgg cttatgatag acatgggtat
     4861 gaggcaataa atcaattgaa gaagtccctg tgtgccatta gtgatattag gtgattattt
     4921 ctaccttact actcaaattc tattttgtgt gtatttgtat gtataatgtg tatgcacatt
     4981 tgtgcatttg tgtaattgtg aatgaatgtg tatgcatgta tgtgcgtgtg tgcatttata
     5041 tgtatgtgca atcatgtata tatacatgtg tgtatgtgtg catgtgtgta tgtgtgttca
     5101 tgaacatgta tacacatgtg tgtatacatg tacatgcatg ttttgtgagc atctttgtgt
     5161 atgtatatgt gtgtacatgt gaggaagcca aaggctgata gtgacttttc aatcactatg
     5221 caccttactt tttgagacag gatctcttaa tgaacctgga cattactgat tcaggtagac
     5281 tatctggcca acaagcccta agaattcacc caatgtggag tgtgaagaat gtatgatttt
     5341 gtgggtgtgc atgcatgtgt caacagttgg gtgtcttcct catttcttct tcatataaaa
     5401 ttcatttatg tgccatgtat gcatgaaacc tggagatgaa acctgtgatt ctggtttgtt
     5461 ttgttttgtt ttgttttgtt ttttatcaaa atgttcagac gagggtattt gacattgcaa
     5521 gacagtcaac ctataatgct tatccttata tcatgggaaa tagaactatt ctatgtgacc
     5581 tggttaattc aggctgagtc tctaagtggc caaggtggac atgaatcatg gacagggcaa
     5641 aaactacttg tttgcaaacc cttcaaatca ttgctttccc tccctcattt gatgtccata
     5701 aaatgataat aaagagtttt ctttcaa
//
