LOCUS       XM_036157897            3460 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus mutS homolog 3 (Msh3), transcript variant
            X5, mRNA.
ACCESSION   XM_036157897
VERSION     XM_036157897.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000079.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3460
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="13"
     gene            1..3460
                     /gene="Msh3"
                     /gene_synonym="D13Em1; REP-1; Rep-3; Rep3"
                     /note="mutS homolog 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 52 ESTs, 120
                     long SRA reads, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     10 samples with support for all annotated introns"
                     /db_xref="GeneID:17686"
                     /db_xref="MGI:MGI:109519"
     CDS             568..2904
                     /gene="Msh3"
                     /gene_synonym="D13Em1; REP-1; Rep-3; Rep3"
                     /codon_start=1
                     /product="DNA mismatch repair protein Msh3 isoform X2"
                     /protein_id="XP_036013790.1"
                     /db_xref="GeneID:17686"
                     /db_xref="MGI:MGI:109519"
                     /translation="MTDTSTNYLLCIYEEKENIKDKKKGNLSVGIVGVQPATGEVVFD
                     CFQDSASRLELETRISSLQPVELLLPSDLSVPTEMLIQRATNVSVRDDRIRVERMNNT
                     YFEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFNLEKML
                     SKPESFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLK
                     NWVTQPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCST
                     QEFFLIVKSLCQLKSELQALMPAVNSHVQSDLLRALIVEAPELLSPVEHYLKVLNGPA
                     AKVGDKTELFKDLSDFPLIKKRKNEIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQE
                     FMIEIKNSAVSCIPADWVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAEWLG
                     FLENFGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHPMI
                     DVLLGEQDQFVPNSTSLSQDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGSYVPAE
                     EATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRASPQSLVILDELGRGTST
                     HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQ
                     DSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSL
                     RRKRLECFTDLWTTHSVKDLHTWADKLEMEEIQTSLPH"
ORIGIN      
        1 attgctgccc gggaactcaa tatttattgc cacttagacc acaactttat gactgcaagc
       61 atacctaccc acagactgtt cgtgcatgtc cgccgacttg tggccaaagg gtacaaggtg
      121 ggagttgtga agcaaactga aactgccgca ttaaaggcca tcggagacaa taaaagttct
      181 gtcttctccc ggaaattgac cgctctttat acgaaatcca cacttattgg tgaagatatc
      241 cttttaggat agaagcttcc tctttcttgt tgtagggggg gatttgcttt aaaatgacaa
      301 atttaactga acagtttttc cttttctcta atgacagtgt gcttgctgag ttgttcaggc
      361 actcctctgt ggtgggtgtg tcaccgagga gagggcggtt cagcgaagag acgccatgca
      421 actgtgactg tccttggaag aatgctgcgt gaggaaataa ccctttatca cttagtgggc
      481 atgaagcagc atgggatttt tctttaatca ttactacatg tgaatcctct catcaggctg
      541 gatgattctg taaatatcga tgaggtaatg acagatacat ctaccaacta tcttctgtgt
      601 atctacgaag aaaaggagaa cattaaagac aaaaagaagg ggaacctttc cgttggtatc
      661 gtgggagtgc agcccgcaac tggcgaggtt gtgtttgact gcttccagga ctctgcttcc
      721 agactggagc tggagactcg catatcaagc ctgcagcctg tggaattact gcttccctcc
      781 gacctgtctg tgccaacaga gatgctcatc caaagagcca ccaatgtcag tgtgcgggat
      841 gacaggattc gagtagaaag gatgaataat acttactttg aatacagcca tgctttccag
      901 acagttacgg agttttatgc tagagagata gttgacagcc agggctctca gagtctctct
      961 ggtgtcatta acttggagaa gcctgtgatc tgcgccttgg ctgccgtaat aaggtacctc
     1021 aaggaattta acctggaaaa gatgctgtcc aaacccgaga gttttaaaca gctgtcaagt
     1081 ggaatggaat tcatgagaat taatgggacc acgctaagga atctggagat ccttcagaat
     1141 cagactgata tgaagaccaa aggaagcttg ctttgggttt tagaccacac taaaacttca
     1201 tttgggagaa ggaagttaaa gaattgggtt acccagccac tgcttaaatt aagggaaata
     1261 aatgcccgac ttgatgcagt atctgatgtt ctccactcag aatccagtgt gtttgagcag
     1321 atagaaaacc ttcttcgtaa gttaccggat gtcgagagag gactatgtag catttatcac
     1381 aagaagtgct ctacccaaga gttcttcttg atcgtcaaaa gcctatgtca actgaagtca
     1441 gagcttcaag cattaatgcc tgctgttaat tcccacgttc agtccgactt actccgagca
     1501 ctcatcgtgg aggctcctga gctcctcagc ccagtggaac attacttaaa ggttctgaat
     1561 gggccagctg ccaaagttgg cgataaaact gaattattca aagacctctc tgacttccct
     1621 ttaataaaaa agaggaaaaa tgaaattcag gaagtcattc acagcatcca aatgcgttta
     1681 caggaatttc ggaaaatatt aaaacttcct tctttacagt atgtgactgt atcaggacaa
     1741 gagtttatga ttgaaataaa gaactcggct gtatcttgca tcccagctga ttgggtgaag
     1801 gttggaagca caaaagctgt gagccgcttt caccctccct tcatcgtgga aagctacaga
     1861 cgtctgaatc agctccggga gcagctagtc cttgactgca atgctgaatg gcttggcttc
     1921 ctagagaatt ttggtgaaca ttatcacact ttgtgtaagg ctgtggatca cctagcaact
     1981 gttgactgta ttttctccct ggccaaggtc gctaaacaag gaaattactg caggccaact
     2041 ctacaagaag aaaagaagat catcataaaa aatggaaggc accctatgat tgatgtgttg
     2101 ctgggtgaac aagatcagtt tgtgcccaac agtacgagtt tatcacagga ctcggagaga
     2161 gtaatgataa tcaccggacc aaacatgggt gggaaaagct cctacataaa acaggttgca
     2221 ctggttacca tcatggctca gattggctcc tacgtccctg cagaggaagc cacaattggg
     2281 attgtggatg gcattttcac aaggatgggt gctgcagaca atatatacaa aggccggagt
     2341 actttcatgg aagaactgac ggacacagcg gaaataatca ggagagcgtc cccacagtcc
     2401 ttggttatcc tggatgagct ggggagaggg acaagcaccc atgacggaat cgccatcgcc
     2461 tatgcaactc tagagtattt tatcagagac gtgaaatcct taacactgtt cgttacccac
     2521 tatccaccag tctgtgaact agaaaaatgt tacccagaac aagtggggaa ttaccacatg
     2581 ggattcttgg tcaatgaaga tgaaagcaag caggactcag gtgacatgga gcagatgccg
     2641 gattctgtca cttttctcta tcagataacc cgaggaattg cagcgagaag ttatggactt
     2701 aatgtggcga agttagcaga tgtacctaga gaagtcttac agaaagccgc gcacaagtct
     2761 aaggagctgg aaggcttagt cagcctgaga aggaaaaggc ttgaatgttt taccgactta
     2821 tggacgacac acagtgtgaa ggacctgcac acatgggcag ataagctgga aatggaggaa
     2881 atacagactt ctctcccaca ttaaaatgaa aactgcattt ttggagtaaa atacagagaa
     2941 ctgaagattc aaactgtaca aaacaactct gtggcaacag ccgtctctgt ggtcttcctt
     3001 ttgagatggc ttctgctctg tgaagggagc ttttcaggct cttgtcctcc tgctttcaga
     3061 agaaaaagac aatggagtgt aaaggcctca attttcctag gcagtacatt tcataccaaa
     3121 gcgggttctt ctaagtaaaa cctaaaacgg aggttcttgg tgcctacatt atcagagggg
     3181 cagtgcctat ttaggttcag acaattgaca acaggctaat ctgacaggaa cctacttttg
     3241 tgagaactaa agaactttat aatgccaggg tttgctcacc aaacacataa acgtttttat
     3301 gagaaggaga atcgcgaagc ttctagaagc cagagcacag gaaggaaagg ccacatgaag
     3361 tgtgaagggc taaatgtcgt catcttttta acagcttgaa ggttggtgta taaaattatt
     3421 ttgtcattta cttaaataaa aatatggaat gaatacttgc
//
