LOCUS       XM_017315412            3767 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus mutS homolog 3 (Msh3), transcript variant
            X6, mRNA.
ACCESSION   XM_017315412
VERSION     XM_017315412.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000079.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017315412.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3767
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="13"
     gene            1..3767
                     /gene="Msh3"
                     /gene_synonym="D13Em1; REP-1; Rep-3; Rep3"
                     /note="mutS homolog 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 52 ESTs, 119
                     long SRA reads, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:17686"
                     /db_xref="MGI:MGI:109519"
     CDS             875..3211
                     /gene="Msh3"
                     /gene_synonym="D13Em1; REP-1; Rep-3; Rep3"
                     /codon_start=1
                     /product="DNA mismatch repair protein Msh3 isoform X2"
                     /protein_id="XP_017170901.1"
                     /db_xref="GeneID:17686"
                     /db_xref="MGI:MGI:109519"
                     /translation="MTDTSTNYLLCIYEEKENIKDKKKGNLSVGIVGVQPATGEVVFD
                     CFQDSASRLELETRISSLQPVELLLPSDLSVPTEMLIQRATNVSVRDDRIRVERMNNT
                     YFEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFNLEKML
                     SKPESFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLK
                     NWVTQPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCST
                     QEFFLIVKSLCQLKSELQALMPAVNSHVQSDLLRALIVEAPELLSPVEHYLKVLNGPA
                     AKVGDKTELFKDLSDFPLIKKRKNEIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQE
                     FMIEIKNSAVSCIPADWVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAEWLG
                     FLENFGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHPMI
                     DVLLGEQDQFVPNSTSLSQDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGSYVPAE
                     EATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRASPQSLVILDELGRGTST
                     HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQ
                     DSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSL
                     RRKRLECFTDLWTTHSVKDLHTWADKLEMEEIQTSLPH"
ORIGIN      
        1 tctttcttgt tgtagggggg gatttgcttt aaaatgacaa atttaactga acagtttttc
       61 cttttctcta atgacagtgt gcttgctgag ttgttcaggc actcctctgt ggtgggtgtg
      121 tcaccgagga gagggcgggt atgtgtccat tgtcacagtg agagcagagt acattgtact
      181 ttaatagcaa gaaaaagaaa tgagagcaat caaccatccc cttgtggggg cgtgttaggt
      241 gtccagggct ttgctggctc cgcagaagct tgctaacatg agacctgaaa ggaacttcct
      301 gacttcatgt gaaaacaact ccagaggcga aattaagaca caattaaatg tgagattgtc
      361 ttcattaatt gacgtcataa acaaattatt gaaatgggta gttggttgaa attttctctt
      421 gcaggcttca gtgtgtacaa tcattatacc aaagtttatc attgctcata aattcttttt
      481 gttagttgaa gcaaagtaac ttcaaaagca taataataag attcttagtt ttttgttctg
      541 agatacagtc tcactgtgta ttacaggctg gtcttgaatt tcttcttaag cctttctggt
      601 tgggattatc cttgtctggg caacatactg gacccattat tttatgaagt gaaatattta
      661 tttagaagat aagaacaagg tgcaattaaa aagatttact agatattcag cgaagagacg
      721 ccatgcaact gtgactgtcc ttggaagaat gctgcgtgag gaaataaccc tttatcactt
      781 agtgggcatg aagcagcatg ggatttttct ttaatcatta ctacatgtga atcctctcat
      841 caggctggat gattctgtaa atatcgatga ggtaatgaca gatacatcta ccaactatct
      901 tctgtgtatc tacgaagaaa aggagaacat taaagacaaa aagaagggga acctttccgt
      961 tggtatcgtg ggagtgcagc ccgcaactgg cgaggttgtg tttgactgct tccaggactc
     1021 tgcttccaga ctggagctgg agactcgcat atcaagcctg cagcctgtgg aattactgct
     1081 tccctccgac ctgtctgtgc caacagagat gctcatccaa agagccacca atgtcagtgt
     1141 gcgggatgac aggattcgag tagaaaggat gaataatact tactttgaat acagccatgc
     1201 tttccagaca gttacggagt tttatgctag agagatagtt gacagccagg gctctcagag
     1261 tctctctggt gtcattaact tggagaagcc tgtgatctgc gccttggctg ccgtaataag
     1321 gtacctcaag gaatttaacc tggaaaagat gctgtccaaa cccgagagtt ttaaacagct
     1381 gtcaagtgga atggaattca tgagaattaa tgggaccacg ctaaggaatc tggagatcct
     1441 tcagaatcag actgatatga agaccaaagg aagcttgctt tgggttttag accacactaa
     1501 aacttcattt gggagaagga agttaaagaa ttgggttacc cagccactgc ttaaattaag
     1561 ggaaataaat gcccgacttg atgcagtatc tgatgttctc cactcagaat ccagtgtgtt
     1621 tgagcagata gaaaaccttc ttcgtaagtt accggatgtc gagagaggac tatgtagcat
     1681 ttatcacaag aagtgctcta cccaagagtt cttcttgatc gtcaaaagcc tatgtcaact
     1741 gaagtcagag cttcaagcat taatgcctgc tgttaattcc cacgttcagt ccgacttact
     1801 ccgagcactc atcgtggagg ctcctgagct cctcagccca gtggaacatt acttaaaggt
     1861 tctgaatggg ccagctgcca aagttggcga taaaactgaa ttattcaaag acctctctga
     1921 cttcccttta ataaaaaaga ggaaaaatga aattcaggaa gtcattcaca gcatccaaat
     1981 gcgtttacag gaatttcgga aaatattaaa acttccttct ttacagtatg tgactgtatc
     2041 aggacaagag tttatgattg aaataaagaa ctcggctgta tcttgcatcc cagctgattg
     2101 ggtgaaggtt ggaagcacaa aagctgtgag ccgctttcac cctcccttca tcgtggaaag
     2161 ctacagacgt ctgaatcagc tccgggagca gctagtcctt gactgcaatg ctgaatggct
     2221 tggcttccta gagaattttg gtgaacatta tcacactttg tgtaaggctg tggatcacct
     2281 agcaactgtt gactgtattt tctccctggc caaggtcgct aaacaaggaa attactgcag
     2341 gccaactcta caagaagaaa agaagatcat cataaaaaat ggaaggcacc ctatgattga
     2401 tgtgttgctg ggtgaacaag atcagtttgt gcccaacagt acgagtttat cacaggactc
     2461 ggagagagta atgataatca ccggaccaaa catgggtggg aaaagctcct acataaaaca
     2521 ggttgcactg gttaccatca tggctcagat tggctcctac gtccctgcag aggaagccac
     2581 aattgggatt gtggatggca ttttcacaag gatgggtgct gcagacaata tatacaaagg
     2641 ccggagtact ttcatggaag aactgacgga cacagcggaa ataatcagga gagcgtcccc
     2701 acagtccttg gttatcctgg atgagctggg gagagggaca agcacccatg acggaatcgc
     2761 catcgcctat gcaactctag agtattttat cagagacgtg aaatccttaa cactgttcgt
     2821 tacccactat ccaccagtct gtgaactaga aaaatgttac ccagaacaag tggggaatta
     2881 ccacatggga ttcttggtca atgaagatga aagcaagcag gactcaggtg acatggagca
     2941 gatgccggat tctgtcactt ttctctatca gataacccga ggaattgcag cgagaagtta
     3001 tggacttaat gtggcgaagt tagcagatgt acctagagaa gtcttacaga aagccgcgca
     3061 caagtctaag gagctggaag gcttagtcag cctgagaagg aaaaggcttg aatgttttac
     3121 cgacttatgg acgacacaca gtgtgaagga cctgcacaca tgggcagata agctggaaat
     3181 ggaggaaata cagacttctc tcccacatta aaatgaaaac tgcatttttg gagtaaaata
     3241 cagagaactg aagattcaaa ctgtacaaaa caactctgtg gcaacagccg tctctgtggt
     3301 cttccttttg agatggcttc tgctctgtga agggagcttt tcaggctctt gtcctcctgc
     3361 tttcagaaga aaaagacaat ggagtgtaaa ggcctcaatt ttcctaggca gtacatttca
     3421 taccaaagcg ggttcttcta agtaaaacct aaaacggagg ttcttggtgc ctacattatc
     3481 agaggggcag tgcctattta ggttcagaca attgacaaca ggctaatctg acaggaacct
     3541 acttttgtga gaactaaaga actttataat gccagggttt gctcaccaaa cacataaacg
     3601 tttttatgag aaggagaatc gcgaagcttc tagaagccag agcacaggaa ggaaaggcca
     3661 catgaagtgt gaagggctaa atgtcgtcat ctttttaaca gcttgaaggt tggtgtataa
     3721 aattattttg tcatttactt aaataaaaat atggaatgaa tacttgc
//
