LOCUS       XM_006517542            3702 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus mutS homolog 3 (Msh3), transcript variant
            X1, mRNA.
ACCESSION   XM_006517542
VERSION     XM_006517542.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000079.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 9, 2015 this sequence version replaced XM_006517542.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3702
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="13"
     gene            1..3702
                     /gene="Msh3"
                     /gene_synonym="D13Em1; REP-1; Rep-3; Rep3"
                     /note="mutS homolog 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 60 ESTs, 130
                     long SRA reads, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     30 samples with support for all annotated introns"
                     /db_xref="GeneID:17686"
                     /db_xref="MGI:MGI:109519"
     CDS             449..3148
                     /gene="Msh3"
                     /gene_synonym="D13Em1; REP-1; Rep-3; Rep3"
                     /codon_start=1
                     /product="DNA mismatch repair protein Msh3 isoform X1"
                     /protein_id="XP_006517605.1"
                     /db_xref="GeneID:17686"
                     /db_xref="MGI:MGI:109519"
                     /translation="MKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMT
                     ASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLI
                     GEDVNPLIRLDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNLSVGIVGVQPATG
                     EVVFDCFQDSASRLELETRISSLQPVELLLPSDLSVPTEMLIQRATNVSVRDDRIRVE
                     RMNNTYFEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFN
                     LEKMLSKPESFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFG
                     RRKLKNWVTQPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIYH
                     KKCSTQEFFLIVKSLCQLKSELQALMPAVNSHVQSDLLRALIVEAPELLSPVEHYLKV
                     LNGPAAKVGDKTELFKDLSDFPLIKKRKNEIQEVIHSIQMRLQEFRKILKLPSLQYVT
                     VSGQEFMIEIKNSAVSCIPADWVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCN
                     AEWLGFLENFGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNG
                     RHPMIDVLLGEQDQFVPNSTSLSQDSERVMIITGPNMGGKSSYIKQVALVTIMAQIGS
                     YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRASPQSLVILDELG
                     RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNE
                     DESKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELE
                     GLVSLRRKRLECFTDLWTTHSVKDLHTWADKLEMEEIQTSLPH"
ORIGIN      
        1 gcccggggag gcaaacggtt ctaagccggt tcttcaggtc tgcgggaagc ctaagatcca
       61 gcgcgtcctc cacggagcca gcagagaagg tgacagaagg tgacagcagg aagaggtcac
      121 tgggaaatgg tgggcccact aagaaaaaag caaggaaagt tccagagaag gaggaagaaa
      181 acatctcagt agcagctcac caccctgagt ccagacagaa gctcttcggg agagacttga
      241 agttctgcca aggtgtactg attttgaaga tatcactctg caacgtgcaa agaatgcggt
      301 tttgtccgaa gattccaaat ctcaggctaa tcagaaagac agtcaatttg gaccctgccc
      361 tgaagttttc cagaagactt ccgattgtaa accttttaac aagcgatcca agagcgtcta
      421 tacaccgtta gaactgcagt acttagatat gaagcagcag cataaagacg cagttttgtg
      481 tgtggagtgt ggttacaagt acagattctt tggggaagat gcagaaattg ctgcccggga
      541 actcaatatt tattgccact tagaccacaa ctttatgact gcaagcatac ctacccacag
      601 actgttcgtg catgtccgcc gacttgtggc caaagggtac aaggtgggag ttgtgaagca
      661 aactgaaact gccgcattaa aggccatcgg agacaataaa agttctgtct tctcccggaa
      721 attgaccgct ctttatacga aatccacact tattggtgaa gatgtgaatc ctctcatcag
      781 gctggatgat tctgtaaata tcgatgaggt aatgacagat acatctacca actatcttct
      841 gtgtatctac gaagaaaagg agaacattaa agacaaaaag aaggggaacc tttccgttgg
      901 tatcgtggga gtgcagcccg caactggcga ggttgtgttt gactgcttcc aggactctgc
      961 ttccagactg gagctggaga ctcgcatatc aagcctgcag cctgtggaat tactgcttcc
     1021 ctccgacctg tctgtgccaa cagagatgct catccaaaga gccaccaatg tcagtgtgcg
     1081 ggatgacagg attcgagtag aaaggatgaa taatacttac tttgaataca gccatgcttt
     1141 ccagacagtt acggagtttt atgctagaga gatagttgac agccagggct ctcagagtct
     1201 ctctggtgtc attaacttgg agaagcctgt gatctgcgcc ttggctgccg taataaggta
     1261 cctcaaggaa tttaacctgg aaaagatgct gtccaaaccc gagagtttta aacagctgtc
     1321 aagtggaatg gaattcatga gaattaatgg gaccacgcta aggaatctgg agatccttca
     1381 gaatcagact gatatgaaga ccaaaggaag cttgctttgg gttttagacc acactaaaac
     1441 ttcatttggg agaaggaagt taaagaattg ggttacccag ccactgctta aattaaggga
     1501 aataaatgcc cgacttgatg cagtatctga tgttctccac tcagaatcca gtgtgtttga
     1561 gcagatagaa aaccttcttc gtaagttacc ggatgtcgag agaggactat gtagcattta
     1621 tcacaagaag tgctctaccc aagagttctt cttgatcgtc aaaagcctat gtcaactgaa
     1681 gtcagagctt caagcattaa tgcctgctgt taattcccac gttcagtccg acttactccg
     1741 agcactcatc gtggaggctc ctgagctcct cagcccagtg gaacattact taaaggttct
     1801 gaatgggcca gctgccaaag ttggcgataa aactgaatta ttcaaagacc tctctgactt
     1861 ccctttaata aaaaagagga aaaatgaaat tcaggaagtc attcacagca tccaaatgcg
     1921 tttacaggaa tttcggaaaa tattaaaact tccttcttta cagtatgtga ctgtatcagg
     1981 acaagagttt atgattgaaa taaagaactc ggctgtatct tgcatcccag ctgattgggt
     2041 gaaggttgga agcacaaaag ctgtgagccg ctttcaccct cccttcatcg tggaaagcta
     2101 cagacgtctg aatcagctcc gggagcagct agtccttgac tgcaatgctg aatggcttgg
     2161 cttcctagag aattttggtg aacattatca cactttgtgt aaggctgtgg atcacctagc
     2221 aactgttgac tgtattttct ccctggccaa ggtcgctaaa caaggaaatt actgcaggcc
     2281 aactctacaa gaagaaaaga agatcatcat aaaaaatgga aggcacccta tgattgatgt
     2341 gttgctgggt gaacaagatc agtttgtgcc caacagtacg agtttatcac aggactcgga
     2401 gagagtaatg ataatcaccg gaccaaacat gggtgggaaa agctcctaca taaaacaggt
     2461 tgcactggtt accatcatgg ctcagattgg ctcctacgtc cctgcagagg aagccacaat
     2521 tgggattgtg gatggcattt tcacaaggat gggtgctgca gacaatatat acaaaggccg
     2581 gagtactttc atggaagaac tgacggacac agcggaaata atcaggagag cgtccccaca
     2641 gtccttggtt atcctggatg agctggggag agggacaagc acccatgacg gaatcgccat
     2701 cgcctatgca actctagagt attttatcag agacgtgaaa tccttaacac tgttcgttac
     2761 ccactatcca ccagtctgtg aactagaaaa atgttaccca gaacaagtgg ggaattacca
     2821 catgggattc ttggtcaatg aagatgaaag caagcaggac tcaggtgaca tggagcagat
     2881 gccggattct gtcacttttc tctatcagat aacccgagga attgcagcga gaagttatgg
     2941 acttaatgtg gcgaagttag cagatgtacc tagagaagtc ttacagaaag ccgcgcacaa
     3001 gtctaaggag ctggaaggct tagtcagcct gagaaggaaa aggcttgaat gttttaccga
     3061 cttatggacg acacacagtg tgaaggacct gcacacatgg gcagataagc tggaaatgga
     3121 ggaaatacag acttctctcc cacattaaaa tgaaaactgc atttttggag taaaatacag
     3181 agaactgaag attcaaactg tacaaaacaa ctctgtggca acagccgtct ctgtggtctt
     3241 ccttttgaga tggcttctgc tctgtgaagg gagcttttca ggctcttgtc ctcctgcttt
     3301 cagaagaaaa agacaatgga gtgtaaaggc ctcaattttc ctaggcagta catttcatac
     3361 caaagcgggt tcttctaagt aaaacctaaa acggaggttc ttggtgccta cattatcaga
     3421 ggggcagtgc ctatttaggt tcagacaatt gacaacaggc taatctgaca ggaacctact
     3481 tttgtgagaa ctaaagaact ttataatgcc agggtttgct caccaaacac ataaacgttt
     3541 ttatgagaag gagaatcgcg aagcttctag aagccagagc acaggaagga aaggccacat
     3601 gaagtgtgaa gggctaaatg tcgtcatctt tttaacagct tgaaggttgg tgtataaaat
     3661 tattttgtca tttacttaaa taaaaatatg gaatgaatac tt
//
