LOCUS       NM_001388450            4371 bp    mRNA    linear   ROD 12-APR-2023
DEFINITION  Mus musculus Myb/SANT DNA binding domain containing 7 (Msantd7),
            transcript variant 1, mRNA.
ACCESSION   NM_001388450
VERSION     NM_001388450.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4371)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 4371)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 4371)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   4  (bases 1 to 4371)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5  (bases 1 to 4371)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   6  (bases 1 to 4371)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   7  (bases 1 to 4371)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732620.14.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-181               AL732620.14        223436-223616       c
            182-262             AL732620.14        221976-222056       c
            263-345             AL732620.14        221817-221899       c
            346-1148            AL732620.14        219095-219897       c
            1149-4371           AL732620.14        215329-218551       c
FEATURES             Location/Qualifiers
     source          1..4371
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2"
     gene            1..4371
                     /gene="Msantd7"
                     /gene_synonym="Gm45902"
                     /note="Myb/SANT DNA binding domain containing 7"
                     /db_xref="GeneID:119065974"
                     /db_xref="MGI:MGI:5805017"
     exon            1..181
                     /gene="Msantd7"
                     /gene_synonym="Gm45902"
                     /inference="alignment:Splign:2.1.0"
     exon            182..262
                     /gene="Msantd7"
                     /gene_synonym="Gm45902"
                     /inference="alignment:Splign:2.1.0"
     exon            263..345
                     /gene="Msantd7"
                     /gene_synonym="Gm45902"
                     /inference="alignment:Splign:2.1.0"
     exon            346..1148
                     /gene="Msantd7"
                     /gene_synonym="Gm45902"
                     /inference="alignment:Splign:2.1.0"
     CDS             587..1672
                     /gene="Msantd7"
                     /gene_synonym="Gm45902"
                     /codon_start=1
                     /product="zinc finger and SCAN domain containing 29"
                     /protein_id="NP_001375379.1"
                     /db_xref="GeneID:119065974"
                     /db_xref="MGI:MGI:5805017"
                     /translation="MATTNSSAGIRWSRQETRTLLSILGEAEYIQRLQTRHHNADIYQ
                     AVSRRMQQEGFCRTERQCRSKFKVLKALYLKAYVAHATSMGDPPHCPFYDTLDHLLRN
                     QIVTDPDNLTEAAAWAKHCYQNLVASDKPGQEGTSIREMKRTQTACHHRILQTVKESN
                     EDCHLRISDQTQEASDLEGSWDDSLGAGCSQGTPSYSSSHHLFRGAVAPCQSNPMTRL
                     GVSRESSPCTSTSRNPPGAASTPQPPGSSSRVAFLSGGDRPLTREPSPRWARRRRRSV
                     ARTISSELAENRRLARELSKREEEKLDRLIAIGEEASAQQDTANELRRDAVIAVRRLA
                     TAVEEATGAFQQGLEKLLQRLISNTKS"
     exon            1149..4371
                     /gene="Msantd7"
                     /gene_synonym="Gm45902"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaccggacg cagtaggcgg gcgggaacgt gaagtctccg cagtgcctga tgggcttgtt
       61 ccgaggaagc tagctgaagc tgctgaaggg tccttcgttg agctgccgtg gtctccgccg
      121 ccttatggcg gcgatcggcg tgcacctggg ctgcacatca gcctgtgtgg ctgtctacaa
      181 ggatggccgg gccgatgtgg ttgcaaatga tgcaggggat agagtcacac cagccattgt
      241 tgcttactcg gaacgtgaac aggtggttgg actggcagca aaacaaagta gaataagaca
      301 tgtttcaagc acagtagtga aagtgaaaca gatccttggc agaaggtagc acggcttctc
      361 ttgctgccag gatgatcctc acacctgccc tgtaactctc gttcccctgt ggccttccag
      421 ccagaagtgt ggtcctcaga cctgccttct cagcagagtg ccctgggagg aaagaaccag
      481 caggctcctg gaaacatgct gagaacaccc agagcttccc cacgcctcga aaactgtgcc
      541 ctgctgcctg ggagcttgct tcagtagcct tccttccctg cccaccatgg caaccactaa
      601 tagcagtgcg ggcatccggt ggtccagaca ggagacacga actcttctct ccatcctagg
      661 tgaggcagag tacatccagc gcctccagac taggcatcac aatgcagata tctatcaggc
      721 ggtgtctagg cgaatgcagc aggagggctt ctgccgcacc gaacgccagt gccgctccaa
      781 gtttaaagtt ctgaaggcat tgtatttaaa ggcctacgtt gcccatgcca caagtatggg
      841 ggacccaccg cactgcccat tttatgatac gttggatcat cttcttcgaa accagatagt
      901 gactgaccca gacaacttaa cggaggctgc tgcttgggcc aagcactgtt atcagaattt
      961 ggtagcctct gacaagccag ggcaagaggg caccagcatt cgggaaatga aaaggacaca
     1021 gacagcttgt catcatcgta ttttgcaaac agttaaggaa tcaaatgagg attgtcacct
     1081 aagaatcagt gaccagacac aagaagccag tgaccttgag ggctcctggg atgactcctt
     1141 gggtgcaggg tgctctcaag ggacccccag ctacagcagc tcccaccacc ttttcagagg
     1201 tgcagttgcc ccctgtcaga gcaaccccat gaccagactg ggtgtgtcga gggagtcaag
     1261 tccctgcacc agcaccagcc gcaaccctcc tggggcagcc tccacaccac agcctccagg
     1321 ctcttcctca agagttgctt ttctctctgg tggggataga cctctgacca gggagccctc
     1381 tccaaggtgg gccaggcgaa gaaggcgctc agtggccaga accatttcat ctgagttggc
     1441 agaaaacagg aggttggcgc gagaactctc caagagagag gaagagaagc tggacaggtt
     1501 gattgctatt ggtgaggagg ccagtgccca gcaagacact gccaatgagc tgcgcaggga
     1561 tgctgtcatc gcagtcagac gcttggccac agcagtggaa gaagcaactg gggctttcca
     1621 gcaagggctt gagaagttgc ttcagaggtt gatttcaaat accaaaagct aggaactgat
     1681 tgaatggaca cctttcccaa actggtacaa gtctgtttct aacaaccacc ttctggaacc
     1741 ctggctcctt tctgtgtctt cagacaaagg aacagatgaa ctgttaatac gcagaagagt
     1801 agtgagttct ttttcctaag attctccact aatggaaagg cccttgagga atgaagagtg
     1861 gcctggtaga aaccagaagg aatcaaatcc aagagctagt ttgttctagc ttcctcacag
     1921 tgtggagcaa ttttctttac ctctaccacg atctcatctg tcaaggcaga tcagtagtca
     1981 ttcctgccct gcctacctca cagggttgtt gtgaggatca agtagtttat agatgtgaaa
     2041 aggtttgaaa gtttgaaagc actgtataat gtaagttatt aatgcatttg cccttggcta
     2101 aggggagctg gggtaagcac attcgtttac aacatacaca ggtatagcag tgtcctgtga
     2161 cctcattgct tgagtcttta tctgtttaat ttgttggcct cttagataga ggtctcaact
     2221 tcttacatct ctctgtggct ccctagtcta ggcacaattg catttgtgtc tttgtctctt
     2281 acattttcac tgctgtatcc ctgacctacc tactagcaaa caccccttgg tccaaccagg
     2341 tttctctctt tcattttact agttcctggt ctctatagag atgagctatt tgagcactgt
     2401 gggaggtaaa tatctcatat tgatagattt tgatgaggta aaatagtgac ttttatgaag
     2461 tagaaaatgt aagtaaattc tttgcattta gtattatctg aggctcttta aatgcataaa
     2521 ttgtgtgttt acattgtggt tggcatttga acatggaaat aatttggatt aatgcatttg
     2581 catcaatcca tttccaatct acttgtggct gattgacttt gtttctgtta gtgggtgttt
     2641 tgtttgggcc ctaccatgta attgagggca agcctagatc cagaggaact tttttccaag
     2701 tgatgtaaac aagagttggt agggttagtg cctgtgatga tagagagcag ctccctttgc
     2761 tcttgagcct ggagaatgct agaagtggta aagacctctg cccagagatg gttctcttca
     2821 agctcacgcc ccgagcaagt acactcccct gacccaggca cacgtcctgg agaggagttg
     2881 gtgacagtaa accacagccc tgtgaggttg ttggccttca gtgaactggt tcttagtggg
     2941 tcttgtagaa ctctagaatc acaggtaaga ctctggggat ttaaatgcca ctcagaagcc
     3001 ggggagaaaa tgaacaggtg ttgggagagc tttgggattt tggagtaggg cgggggagtg
     3061 tcacattgta gtcaggggct tagtggaagc tggacatttg aattagtaaa gaaaaggaca
     3121 aaaacaaaaa aatggtggga cctcatggaa ccaggagtag gtggcaaagg gcaagctgta
     3181 gagtgagcgc tgactgcctg agcagtgtgt tgtggacttc gctggaatct ggctagacca
     3241 cccaactcca gccccgtccc cgccacagct gttggcattg ggggcaacac ttaccctttt
     3301 tgtgcctcga tttcttttat ctccaagttg aggaatttct actacatttt tatagtatct
     3361 ttcagttcta gaattttaaa taatatggta aaggtaaaaa tgaggtgagc tatttatagt
     3421 attttcaggc agtggctgtt aatgtacgtt tgaaatactg tttatggctg tatttaaagg
     3481 caccctctgt agtgtggaca tttatcactg tgctggtgag agctctaagc cttgtactgg
     3541 atggacaccc actgatgcct ttctttcctt gaagtggata tataagtgtg tgttgtcttt
     3601 tgtttgaggc catgatgtag aaagtacata tctgttgtaa ccaaataaag ctaatgtaga
     3661 ccatagtatt ctggaaacaa cagaaaagta tttaactacc tagtaaggat ctaacggtgg
     3721 cagtgtgtgg ttgggcctct acctgacgtg agagacaggc tggagcagag atggagttaa
     3781 agttgaggta tcttgaaaac cctgataggc agagtaaaca aaataaggaa ataaatctca
     3841 aggtcctgaa gagttattag gaaaacatgc aaagtggtag aggagacagt gcacggtgca
     3901 ggccatgtgc aggaaggcag gctggagtcc tgcctgaact ttagccctaa cccagtacct
     3961 cctccatcaa gttacctcct ccctttcacc attctgtaac tcaggttctt ccttaaaatg
     4021 ggaactaacg atcgcccgtc ctacctactt cacaggggtg ttgtgaggat cagtgcacag
     4081 atgaacgaat gttcagttag atttgtagac actggggttt accaggagtg gggaaggaga
     4141 acccacagca cgtgagcacg ggtgttgcca aacccagggc cactgtaaga gatacttgag
     4201 gataaggtgg gcatgcattg ctgggttgct ggtaagaact tgtggtgcaa tgggagacta
     4261 gactcctcct gcagggcatg gtgtgaacca ggtgctgtgc agaccagttg cccatctttg
     4321 tcatgtaact taatcctgct gtagacaaat aaaagttttg actggtgtgg a
//
