LOCUS       NM_001277575            1273 bp    mRNA    linear   ROD 18-AUG-2023
DEFINITION  Mus musculus Myb/SANT DNA binding domain containing 5 family member
            5 (Msantd5f5), mRNA.
ACCESSION   NM_001277575 XR_140617
VERSION     NM_001277575.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX294159.21.
            
            On Jan 8, 2020 this sequence version replaced NM_001277575.1.
            
            Summary: This gene belongs to a family of related genes tandemly
            arranged in two clusters on chromosome 4. This family, which
            appears to be mouse-specific and composed of multiple highly
            similar members, is supported by limited transcript data. Members
            of the family maintain an intact open reading frame although the
            encoded protein has no known function. This gene is inferred from
            alignment of paralogous transcripts. [provided by RefSeq, Apr
            2013].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignment of paralogous transcripts.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                BX294159.21        23523-23594
            73-160              BX294159.21        26709-26796
            161-469             BX294159.21        27267-27575
            470-547             BX294159.21        27854-27931
            548-853             BX294159.21        28909-29214
            854-1273            BX294159.21        29518-29937
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 36.06 cM"
     gene            1..1273
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /note="Myb/SANT DNA binding domain containing 5 family
                     member 5"
                     /db_xref="GeneID:623197"
                     /db_xref="MGI:MGI:3702292"
     exon            1..72
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..1149
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /codon_start=1
                     /product="uncharacterized protein LOC623197"
                     /protein_id="NP_001264504.1"
                     /db_xref="GeneID:623197"
                     /db_xref="MGI:MGI:3702292"
                     /translation="MNLTDYHVQLQYEREDNRVQSVRNDKEANRRRRLRQEGQSSSGP
                     CDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVM
                     VKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGPWFDGHGNPPASYA
                     PSLCIDGAISLGPSFSPWTDPEIKIFLQEWQVVEREFGHPGQKIKQKSSLVCQRLYHR
                     GLFKDIQSCLDLMWTMKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGVQ
                     YNWSGYHRPSSNPQTPMVMPSPVYQPWDYGMAASSGQLPWIPLLIMSSQDLLVPRWDA
                     WNATYPLPVQHVFQASLPGDNNFQLPWSPRDESSSPQ"
     exon            73..160
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /inference="alignment:Splign:2.1.0"
     exon            161..469
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /inference="alignment:Splign:2.1.0"
     exon            470..547
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /inference="alignment:Splign:2.1.0"
     exon            548..853
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1273
                     /gene="Msantd5f5"
                     /gene_synonym="Gm11236; Gm11237"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccccttcata acttaaaaat cagtaccacc tggatgaatc tcaccgatta ccacgtccag
       61 ctacagtatg agagagaaga taaccgagtc caaagtgtga gaaatgacaa agaagccaat
      121 aggaggagga ggctgaggca agaaggccaa agttcctcag gtccgtgtga tagcccgtgg
      181 actgaggatg aaatctggat cttgctgcaa gagtgggcaa tggttgaata tgaactcgga
      241 gacccaggca ataagatgca tgcgaaggcc aagtccctta gcagacgcct ctctaatcgg
      301 ggtctgagga agagcaagaa tagctgcctt gatgtgatgg tgaagatgaa ggacctgcac
      361 acacgtcttt gtaacgagag gccccgggct taccgcttgt attcgactta tgaatggatc
      421 ctgtacgaga tcttgggcca ccccagatcc cagggaggct atgtgccagg tccttggttt
      481 gatgggcacg gtaacccacc agcttcctat gcaccttccc tctgcattga tggtgccatc
      541 tctctaggcc cttcctttag cccatggacc gaccctgaaa tcaagatctt cctgcaggag
      601 tggcaagtgg ttgaacggga atttggccac ccaggccaga agatcaagca gaagagcagt
      661 cttgtttgcc agcgtctcta tcatcgaggc ctgttcaagg acatccaaag ctgtttggac
      721 ctgatgtgga ccatgaagga tctgcactcc actctcagta gagagagatc aaggactgta
      781 cccttgtttt ctccttatag agattatctg gaaaggatct tcgaccccaa atgtcagaga
      841 ggccatgttc caggtgttca gtataattgg tctggttacc acaggccttc ctcaaaccct
      901 caaactccaa tggtgatgcc atctcctgta taccagcctt gggattatgg catggctgca
      961 tcttctggtc agcttccctg gatcccatta ctaatcatgt ccagtcagga cttactggtt
     1021 cccagatggg atgcctggaa tgccacctat ccattgccag ttcaacatgt atttcaggcc
     1081 tctctccctg gagacaacaa ctttcagctg ccgtggtcac ctcgtgatga gagctcaagt
     1141 cctcagtgaa gacatgtggg gacttttctt tttcctctga aaaccactaa gaatcttcca
     1201 gcactgtatg gatcctcaat gtctctattt tattgtaaag gaaatgtgaa atcaaataaa
     1261 ttattttgac aca
//
