LOCUS       NM_001081644            1325 bp    mRNA    linear   ROD 18-AUG-2023
DEFINITION  Mus musculus Myb/SANT DNA binding domain containing 5 family member
            1 (Msantd5f1), mRNA.
ACCESSION   NM_001081644 XM_887670
VERSION     NM_001081644.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1325)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 1325)
  AUTHORS   Tanaka TS, Jaradat SA, Lim MK, Kargul GJ, Wang X, Grahovac MJ,
            Pantano S, Sano Y, Piao Y, Nagaraja R, Doi H, Wood WH 3rd, Becker
            KG and Ko MS.
  TITLE     Genome-wide expression profiling of mid-gestation placenta and
            embryo using a 15,000 mouse developmental cDNA microarray
  JOURNAL   Proc Natl Acad Sci U S A 97 (16), 9127-9132 (2000)
   PUBMED   10922068
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK139501.1.
            
            On Feb 23, 2007 this sequence version replaced XM_887670.2.
            
            Summary: This gene belongs to a family of related genes tandemly
            arranged in two clusters on chromosome 4. This family, which
            appears to be mouse-specific and composed of multiple highly
            similar members, is supported by limited transcript data. Members
            of the family maintain an intact open reading frame although the
            encoded protein has no known function. This gene is supported by
            alignment of transcripts. [provided by RefSeq, Apr 2013].
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139501.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1325              AK139501.1         3-1327
FEATURES             Location/Qualifiers
     source          1..1325
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 36.06 cM"
     gene            1..1325
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /note="Myb/SANT DNA binding domain containing 5 family
                     member 1"
                     /db_xref="GeneID:242502"
                     /db_xref="MGI:MGI:2685274"
     exon            1..125
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /inference="alignment:Splign:2.1.0"
     CDS             120..1202
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /codon_start=1
                     /product="uncharacterized protein LOC242502"
                     /protein_id="NP_001075113.1"
                     /db_xref="CCDS:CCDS38785.1"
                     /db_xref="GeneID:242502"
                     /db_xref="MGI:MGI:2685274"
                     /translation="MQREDNRVQSVRNDKEANRRRRLRQEGQSSSGPCDSPWTEDEIW
                     ILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLC
                     NERPRAYRLYSTYEWILYEILGHPRSQGGYVPGPWFDGHGNPPASYATSLCIGGAISL
                     GPSFSPWTDPEIKIFLQEWQVVEREFGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLD
                     LMWTMKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGVQYNWSGYHRPSS
                     NPQTPMVMPSPVYQPWDYGMAASSGQLPWIPLLIMSSQDLLVPRWDAWNATYPLPVQH
                     VFQASLPGDNNFQQLWSPRDESSSPQ"
     exon            126..213
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /inference="alignment:Splign:2.1.0"
     exon            214..522
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /inference="alignment:Splign:2.1.0"
     exon            523..600
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /inference="alignment:Splign:2.1.0"
     exon            601..906
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1325
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1308..1313
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Msantd5f1"
                     /gene_synonym="Gm428"
                     /note="putative"
ORIGIN      
        1 acttgtagta gtccagggaa gtaagcagag ctccttgcac tgcagactct tgtgaacacc
       61 gggacacatt agaccctagt ttcctcactg tgttcgggaa aggaagctca ggagacaaaa
      121 tgcagagaga agataaccga gtccaaagtg tgagaaatga caaagaagcc aataggagga
      181 ggaggctgag gcaagaaggc caaagttcct caggtccgtg tgatagcccg tggactgagg
      241 atgaaatctg gatcttgctg caagagtggg caatggttga atatgaactc ggagacccag
      301 gcaataagat gcatgcgaag gccaagtccc ttagcagacg cctctctaat cggggtctga
      361 ggaagagcaa gaatagctgc cttgatgtga tggtgaagat gaaggacctg cacacacgtc
      421 tttgtaacga gaggccccgg gcttaccgct tgtattcgac ttatgaatgg atcctgtacg
      481 agatcttggg ccaccccaga tcccagggag gctatgtgcc aggtccttgg tttgatgggc
      541 acggtaaccc accagcttcc tatgcaactt ccctctgcat tggtggtgcc atctctctag
      601 gcccttcctt tagcccatgg accgaccctg aaatcaagat cttcctgcag gagtggcaag
      661 tggttgaacg ggaatttggc cacccaggcc agaagatcaa gcagaagagc agtcttgttt
      721 gccagcgtct ctatcatcga ggcctgttca aggacatcca aagctgtttg gacctgatgt
      781 ggaccatgaa ggatctgcac tccactctca gtagagagag atcaaggact gtacccttgt
      841 tttctcctta tagagattat ctggaaagga tcttcgaccc caaatgtcag agaggccatg
      901 ttccaggtgt tcagtataat tggtctggtt accacaggcc ttcctcaaac cctcaaactc
      961 caatggtgat gccatctcct gtataccagc cttgggatta tggcatggct gcatcttctg
     1021 gtcagcttcc ctggatccca ttactaatca tgtccagtca ggacttactg gttcccagat
     1081 gggatgcctg gaatgccacc tatccattgc cagttcaaca tgtatttcag gcctctctcc
     1141 ctggagacaa caactttcag cagctgtggt cacctcgtga tgagagctca agtcctcagt
     1201 gaagacatgt ggggactttt ctttttcctc tgaaaaccac taagaatctt ccagcactgt
     1261 atggatcctc aatgtctcta ttttattgta aaggaaatgt gaaatcaaat aaattatttt
     1321 gacac
//
