LOCUS       NM_001145924            1745 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus Myb/SANT-like DNA-binding domain containing 3
            (Msantd3), transcript variant 1, mRNA.
ACCESSION   NM_001145924
VERSION     NM_001145924.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Oleskevich,S., Leck,K.J., Matthaei,K. and Hendry,I.A.
  TITLE     Enhanced serotonin response in the hippocampus of Galphaz protein
            knock-out mice
  JOURNAL   Neuroreport 16 (9), 921-925 (2005)
   PUBMED   15931062
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK011381.1, AK017795.1 and BC052696.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. All three transcripts encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK017795.1, AK011381.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               AK011381.1         3-146
            145-191             AK017795.1         149-195
            192-1745            BC052696.1         114-1667
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 26.13 cM"
     gene            1..1745
                     /gene="Msantd3"
                     /gene_synonym="2410046L14Rik; 2810429P03Rik;
                     5730528L13Rik; Mysantd3"
                     /note="Myb/SANT-like DNA-binding domain containing 3"
                     /db_xref="GeneID:66665"
                     /db_xref="MGI:MGI:1913915"
     exon            1..191
                     /gene="Msantd3"
                     /gene_synonym="2410046L14Rik; 2810429P03Rik;
                     5730528L13Rik; Mysantd3"
                     /inference="alignment:Splign:2.1.0"
     exon            192..642
                     /gene="Msantd3"
                     /gene_synonym="2410046L14Rik; 2810429P03Rik;
                     5730528L13Rik; Mysantd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             225..1052
                     /gene="Msantd3"
                     /gene_synonym="2410046L14Rik; 2810429P03Rik;
                     5730528L13Rik; Mysantd3"
                     /note="UPF0439 protein C9orf30 homolog"
                     /codon_start=1
                     /product="myb/SANT-like DNA-binding domain-containing
                     protein 3"
                     /protein_id="NP_001139396.1"
                     /db_xref="CCDS:CCDS18167.1"
                     /db_xref="GeneID:66665"
                     /db_xref="MGI:MGI:1913915"
                     /translation="MQNNEIIKPAKYFSELEKSILLALVEKYKYVLECKKSDARTIAL
                     KQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVKRSGSPLLS
                     SHVLDKEKISSMLPEQLYFLQSPPEEEPEYHQDAAAQESFAVSNRELCEDEKEFGPFP
                     VCEGTSQPEPSCSAVRITANKNYRSKTPQEGALKKMHEEEHHQQMSILQLQLIQMNEV
                     HVAKIQQIERECEMAEEEHRIKMEVLNKKKMYWERKLQTFTKEWPVSSFNRPFPNSP"
     exon            643..1719
                     /gene="Msantd3"
                     /gene_synonym="2410046L14Rik; 2810429P03Rik;
                     5730528L13Rik; Mysantd3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1697..1702
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Msantd3"
                     /gene_synonym="2410046L14Rik; 2810429P03Rik;
                     5730528L13Rik; Mysantd3"
                     /note="hexamer: ATTAAA"
     polyA_site      1717
                     /gene="Msantd3"
                     /gene_synonym="2410046L14Rik; 2810429P03Rik;
                     5730528L13Rik; Mysantd3"
                     /note="major polyA site"
ORIGIN      
        1 aaaagttggc gctgaactca gagtaggaag gggtgccgtt cccagcctcg tggagtcccc
       61 gacgaaaagg gcccacgtca gtcaggaggc tcgcgctaac tcgtgcgggc gactgccaca
      121 tccccggtgt gggaaaatgc attcttttgt tgttggcgga gacgggcccc ttccgcagct
      181 cccgggccaa ggctagccaa cgaccaggag aaatagagtg gaaaatgcaa aacaacgaaa
      241 tcattaaacc tgccaagtac ttctcggagc tggagaagag catcttgctt gccttggtag
      301 agaagtacaa gtatgtgttg gaatgcaaga agagcgacgc gcggactatt gctctcaagc
      361 agcggacctg gcaggccttg gcccacgagt acaactcgca gcccagcgtg tcgctgcggg
      421 acttcaaaca gctcaagaag tgctgggaga acatcaaggc tcggaccaaa aaaattatgg
      481 cccacgagag gcgggagaag gtgaagcgca gcgggagccc gttgctgagc agccacgtcc
      541 tggacaagga gaagatcagc agcatgctgc cggagcaact gtacttcctt cagagcccac
      601 cggaggagga gcccgaatac caccaggatg cggccgccca agagtccttt gctgtttcaa
      661 atcgagaact gtgcgaggat gagaaagagt tcgggccctt tccggtctgt gaggggacct
      721 cacaacccga accttcatgc tcagccgtca ggataaccgc caataaaaac tacaggagca
      781 aaacccctca ggaaggtgct ttaaagaaaa tgcacgagga ggagcaccat cagcagatgt
      841 ccatcttaca gctgcagctg atccaaatga acgaggtgca cgtggccaaa atccagcaga
      901 tcgagcgcga gtgcgagatg gccgaggagg agcaccggat caaaatggaa gtcctcaata
      961 aaaagaagat gtactgggag aggaaactgc agacttttac caaggagtgg cccgtctcct
     1021 cgtttaaccg gccctttccc aattcaccct aagacttggg gatggctccc ttgtagttaa
     1081 tctctgttgg caaggcgagt gtggggtgtg gcctttttgg tcactagccc gcaacagacc
     1141 tgcgtctagg tggattagag tggtagtagt cacttattta aggatacatt caggtaaaac
     1201 agctgcaccc cgtctacccc cgaggtggcc aagaagctgt tacagtcttc taaaagtcac
     1261 cactatgcgt gctataattc tgaatgtaac attcttaatt agaattcata gatgaaccat
     1321 gtgtgagtgt tggttttttt ttttttaaga aatgcaagat aaaggagtgt ggctggtgat
     1381 tttgacttta tcttttagtg ggtttttgtt cttttgtttg tttttcagct gactggagct
     1441 tttacaccag gtacgcccca ttcattgtac ggctgggtgc ttggctgttt tcccacctct
     1501 ggagtgtggt cgtttgaaga gcccagcctt tggaggggtg tttcctcatg tgggtcacaa
     1561 attgcctttt aagactttcc ccagagaggc tttccaacca accacgtctc cagcagaggc
     1621 ggcttcaata caagtaggga ggttaacaac tttgagggct taatgttcac ttaggttcct
     1681 acatcctgtt tgttttatta aaaatgtctt aaaattttaa aaaaaaaaaa aaaaaaaaaa
     1741 aaaaa
//
