LOCUS       NM_207277               2793 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus Myb/SANT-like DNA-binding domain containing 1
            (Msantd1), transcript variant 1, mRNA.
ACCESSION   NM_207277 XM_132013
VERSION     NM_207277.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 2793)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK044284.1.
            
            On Aug 30, 2004 this sequence version replaced XM_132013.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK044284.1, SRR1660815.229182.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 17.94 cM"
     gene            1..2793
                     /gene="Msantd1"
                     /gene_synonym="A930005I04Rik; Gm144"
                     /note="Myb/SANT-like DNA-binding domain containing 1"
                     /db_xref="GeneID:403174"
                     /db_xref="MGI:MGI:2684990"
     exon            1..2001
                     /gene="Msantd1"
                     /gene_synonym="A930005I04Rik; Gm144"
                     /inference="alignment:Splign:2.1.0"
     CDS             1682..2518
                     /gene="Msantd1"
                     /gene_synonym="A930005I04Rik; Gm144"
                     /note="isoform 1 is encoded by transcript variant 1;
                     myb/SANT-like DNA-binding domain-containing protein 1"
                     /codon_start=1
                     /product="myb/SANT-like DNA-binding domain-containing
                     protein 1 isoform 1"
                     /protein_id="NP_997160.1"
                     /db_xref="CCDS:CCDS19221.1"
                     /db_xref="GeneID:403174"
                     /db_xref="MGI:MGI:2684990"
                     /translation="MVRWPGLRPCLSAILNPAGASNMAAAEVPGYLVSPQTEKHRRAR
                     NWTDAEMRGLMLVWEEFFDELKQTKRNAKVYEKMASKLFEMTGERRLGEEIKIKITNM
                     TFQYRKLKCMTDSESIPPDWPYYLAIDRILAKVPESCEGKLPDGQQPGPSTSQTEASL
                     SPSAKSTPLYLPYTQCSYEGHFEDDRSDSSSSLLSLKFRSEERPVKKRKMRSCHLQKK
                     KLRLLEAMLEEQRRLSRAMEETCREVRRVLDQQNILQVQSLQLQERMMSLLEKIIAKS
                     NV"
     exon            2002..2277
                     /gene="Msantd1"
                     /gene_synonym="A930005I04Rik; Gm144"
                     /inference="alignment:Splign:2.1.0"
     exon            2278..2793
                     /gene="Msantd1"
                     /gene_synonym="A930005I04Rik; Gm144"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2777..2782
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Msantd1"
                     /gene_synonym="A930005I04Rik; Gm144"
                     /note="putative"
     polyA_site      2793
                     /gene="Msantd1"
                     /gene_synonym="A930005I04Rik; Gm144"
                     /note="putative"
ORIGIN      
        1 agggggtcct tcctggagga aggaggtaat ttctaggcac tgagctctga gaaccagacc
       61 caggttccat gctcagcact agggggcagc aatgaaccag caggccagta gtatgcctgg
      121 catgctcagt atctatctga ctttggcagg aagaggagtt tttgcagacc ttctgggtac
      181 tcttttagga gaaatggaac aatcgtgggt atctgtctgc tagctcagca gtaggaagtc
      241 ccaaaatgac tcccaaggtt cagagaggaa gcctgacatt cacctgaacc tatgaaatga
      301 cagcaagacc tccaggggca accctctgcc tccttttcat ttctaatttt ggattgaaac
      361 tcaggtcact ccccctaccc agtaagttac tgactatgct ccttacagtg gacacaggaa
      421 gcccagagac attgctttct ccagtctaag ttcttcctat ctttgatcag gcagggggaa
      481 agccaacaaa gaccactgtt gttctgctga ccagagagtt ttaactagtt gtttggagac
      541 caggcatgac taccaataga gtactgggcc cagagagtct aggatcagac tagactgtgt
      601 gtccacaaca gccagcctag catgagggtc ttaggtccat gtagtctcat ttgtgacttg
      661 ccttccagat gttagctatt gatgccctgt ggtaactttc ccctctgcgg attccacatt
      721 ctacattctt gctctgctgc ctcctcagcc tgaggtccct gcctagccct gtgggcatat
      781 taacccttcc tcttgatgtt ttgcctgtcc ccaccccaac actgctgtgt ctcttgagga
      841 ctagccctgc tcaggacatt gaagttaccc tctgactgca gccacttttc ctcagctgag
      901 gggcctcctc agctcagctc ggtttgcccc ttccgtcagg gctgtgctta tgcttctccc
      961 catgttgaag gtcaacatct gtgtccttca ggccggcatg gctaggcaag gtctagctct
     1021 gacttgcctg gcttcccagc acccacacaa cctgacaccc agggggttgc attagttaaa
     1081 caagagaagc agagtcaatg gggagaaggc tgggccctat gaggaccggc ttcagtaaag
     1141 cttggcaggc ctctgagaag agggtgacct ctcagcaagg acctcaccac acgaacagcc
     1201 atcaaggcag tatcagggcc tccacctcct ttgtaaccct gcaccttatg tctcagcata
     1261 ctacttgccc atcttgggcc tccctggact ctaacctata taaatcaggt ggggctgagg
     1321 tagggactac tgcctagatg cccatgtagg agcctgtcag gcacagtgaa agcaagtctc
     1381 ttctggggcc tagagggcca gcagggtggg aggagggctg ggagccacag tgggcttggg
     1441 tacagcctct cactgcaata ttgatggccc gttagtgcgg ccctgattcc tgtgctttca
     1501 gttaaaaggt ttctgttgtt gtagcttatg cagttgctct gttgctatgg aaacatgaca
     1561 tcaaaatgac gtttcccgtt taaaagcttt taactaaatt cctgcctgtc agatgtaggc
     1621 cccattttga gcgtggagct gcctcgagca agcgagtgaa caagcgcact gcctctcgcc
     1681 catggtgcgc tggccaggcc tgaggccctg cctgagtgcc atccttaacc ctgcaggtgc
     1741 ctccaacatg gcagcagccg aagtgcctgg ctaccttgtg tctcctcaga cggagaagca
     1801 tcggagggcc cgcaactgga cagatgcaga gatgcgcggc ctcatgctgg tctgggagga
     1861 gttctttgat gagctcaagc agaccaagcg caatgccaag gtgtacgaga agatggccag
     1921 caagctcttt gagatgactg gggagcgacg gctaggcgag gagatcaaga tcaaaatcac
     1981 caacatgacc ttccagtaca ggaaattaaa atgcatgaca gatagcgagt ccatcccgcc
     2041 ggactggccc tattacctag ccattgatag gattctggcc aaggtccctg agtcctgtga
     2101 gggcaaactg ccggatggcc agcagccggg gccctctacg tcccagaccg aggcgtccct
     2161 gtcgccgtct gctaagtcca cccctctgta cttaccgtat acccagtgct cctatgaagg
     2221 ccacttcgag gacgatcgct ccgacagctc ctccagctta ctgtccctta agttcaggtc
     2281 agaggaacgc cccgtgaaga aacgcaagat gcggagctgt cacctacaga aaaagaagct
     2341 gcgactgctg gaggccatgc tggaggaaca gcgccggctg agccgtgcca tggaggagac
     2401 atgccgagag gtgcgccgtg tgctggacca gcagaacatc ctgcaggtcc agagcctgca
     2461 gcttcaggag cgaatgatga gcctactgga gaagatcatt gccaagtcca acgtctagtc
     2521 catggagaga atgccaggtg ccacgccgtc ctatcccgag gcccacccag gctcagagtt
     2581 ctgctcactc aggccgagtt ccagcctggc ctctgtgctt ctctgaaggg ctttctagga
     2641 ctccagtggc attgggagac cttgggatcc ccatctccag cattaatcta gggactccaa
     2701 gacgacaggt agtgagaagg tcccagaagc cactctccag tatagtctct atctgatact
     2761 tgaaacagct tttgatatta aacataactt tcc
//
