LOCUS       NM_028595               1844 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus membrane-spanning 4-domains, subfamily A, member 6C
            (Ms4a6c), transcript variant 1, mRNA.
ACCESSION   NM_028595 NM_179202
VERSION     NM_028595.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Liang,Y. and Tedder,T.F.
  TITLE     Identification of a CD20-, FcepsilonRIbeta-, and HTm4-related gene
            family: sixteen new MS4A family members expressed in human and
            mouse
  JOURNAL   Genomics 72 (2), 119-127 (2001)
   PUBMED   11401424
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY164174.1, AK150397.1, AK152258.1 and BY691481.1.
            
            On Oct 21, 2009 this sequence version replaced NM_028595.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK152258.1, AK150397.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               BY164174.1         9-112
            105-1413            AK150397.1         2-1310
            1414-1599           AK152258.1         1312-1497
            1600-1844           BY691481.1         155-399
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 8.44 cM"
     gene            1..1844
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     6C"
                     /db_xref="GeneID:73656"
                     /db_xref="MGI:MGI:2385644"
     exon            1..189
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            190..352
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            353..487
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            488..544
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            545..751
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            752..852
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1844
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1822..1827
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1844
                     /gene="Ms4a6c"
                     /gene_synonym="2200009H22Rik; 2210417N07Rik"
                     /note="major polyA site"
ORIGIN      
        1 taacagtcca cagcctgtaa gcaccacttc ccttcccgtg cagcgagcac agaagaagga
       61 aggactggag acagttacaa gttcacaaga aggaaccaag gatcagcctg agagaaccca
      121 gagttaaggc tcttagggtt tctgagagct cggctggaag tgactgggtg acaaggcaca
      181 caggctcagc tgtggcagct ccatcatgat tccacaggta gtgaccaatg agaccatcac
      241 aacgatttca ccaaatggaa tcaactttcc ccaaaaagac gagtcccagc ctacccaaca
      301 gaggcaagac agcctgaaga aacatctaaa ggctgagatc aaagtgatag tggcaatcca
      361 gatcatgtgt gctgtgacag tgttggctct gggaatcatt ttggcatctg ttcctcctgt
      421 cccatatttt aactcagtgt tttctgtcct gttaaaatct ggctacccat ttataggagc
      481 tttgtttttt attgcctctg gaattttgtc catcattacg gagagaaagt caacaaaacc
      541 tttggtagat gccagcctaa ctctgaatat cctgagtgtt tcatttgctt tcgtgggcat
      601 cattatcatc tctgtcagcc tggctggttt gcatcctgcc tcagagcaat gcaagcagag
      661 caaggagctt agtctaattg aacatgacta ctaccaacct ttctacaact cagacaggag
      721 tgaatgtgcc gtcaccaagt ctattctgac tggagccctt tcagtgatgc tgatcatcag
      781 tgtgttggag cttggtctgg ctttgctctc tgccatgctg tggttgagag agggtgttct
      841 gacttccctt agaatgtgat tttttctgtc ttataactcc aataatgaag ccaatgtgga
      901 atcaaaggca ctttgtaact gtgcatatga ggaacgattg gtttttttta agaaaaacaa
      961 aacaagacaa aacaaaacaa aaaaaacaaa aaaacaaaat acccgaaaca agtgggaact
     1021 atacagcaga ggatatgtct tcatgataat gcagaaaatc caaccatcac agggtagcaa
     1081 tgcttgctac ttaaaatgta gactgttcat acagtgggca ccagtataag ttgaatgtgt
     1141 gtattactgg caccctactg attttcatga ccttggcttc agccaaagcc cagacctaca
     1201 aatggtggcc tttcttagaa aaccaaacag acattatgaa ctaaccagta ccccagagct
     1261 cttgactcta gctgcatatg tatcaaaaga tgacctagtc ggccatcact ggaaagagag
     1321 gcccattggt caggcaaact ttatatgccc cagtacaggg gaacaccagg gccaaaaaat
     1381 gggagtgggt gggtaggaga gtgggggggg ggggactttt gggatagcat tggaaatgta
     1441 attgaagaaa atacgtaata aaaaaaaaga aagaaagaaa accaaacaga atgtttcagg
     1501 ccattgtagt ggagcaaagg gacaacattt tcttgccccc tgcaattaac agcaacagtt
     1561 aaccattagc agtctttgta ttcagaatct ctgctatgac gtgggtcttc tctcatatca
     1621 attttattga ctagtgcata gaaactagtg gcatgcaatg aagtctcaag agtattcatg
     1681 ctgttggttc aaaataaagt cttttttgat tgtatgttct atatgtaagg gcttttgttg
     1741 ttattttgtt tttatgcaca gatcaagtcc cctgtgatat gtaaacacat ttgtttgata
     1801 ttcttttgtt ctctatcaac caataaaagc atgggaaaga caaa
//
