LOCUS       NM_027209               1687 bp    mRNA    linear   ROD 27-JUL-2024
DEFINITION  Mus musculus membrane-spanning 4-domains, subfamily A, member 6B
            (Ms4a6b), mRNA.
ACCESSION   NM_027209
VERSION     NM_027209.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Thiagarajan,R.D., Georgas,K.M., Rumballe,B.A., Lesieur,E.,
            Chiu,H.S., Taylor,D., Tang,D.T., Grimmond,S.M. and Little,M.H.
  TITLE     Identification of anchor genes during kidney development defines
            ontological relationships, molecular subcompartments and regulatory
            pathways
  JOURNAL   PLoS One 6 (2), e17286 (2011)
   PUBMED   21386911
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   3  (bases 1 to 1687)
  AUTHORS   Liang,Y. and Tedder,T.F.
  TITLE     Identification of a CD20-, FcepsilonRIbeta-, and HTm4-related gene
            family: sixteen new MS4A family members expressed in human and
            mouse
  JOURNAL   Genomics 72 (2), 119-127 (2001)
   PUBMED   11401424
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC165168.3.
            
            On Nov 17, 2006 this sequence version replaced NM_027209.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF237909.1, AK075671.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               AC165168.3         117771-117886       c
            117-279             AC165168.3         115960-116122       c
            280-414             AC165168.3         114640-114774       c
            415-471             AC165168.3         112479-112535       c
            472-669             AC165168.3         109548-109745       c
            670-771             AC165168.3         107770-107871       c
            772-1687            AC165168.3         106042-106957       c
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 8.44 cM"
     gene            1..1687
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     6B"
                     /db_xref="GeneID:69774"
                     /db_xref="MGI:MGI:1917024"
     exon            1..116
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            117..279
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..867
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member
                     6B"
                     /protein_id="NP_081485.2"
                     /db_xref="CCDS:CCDS29601.1"
                     /db_xref="GeneID:69774"
                     /db_xref="MGI:MGI:1917024"
                     /translation="MIPQVVTSETVAMISPNGMSLPQTDKPQPFHQWQDSLKKHLKAE
                     IKVMAAIQIMCAVMVLSLGIILASVPSNLHFTSVFSVLLKSGYPFIGALFFIVSGILS
                     IVTETKSTKILVDSSLTLNILSVSFAFMGIIIISVSLAGLHPASEQCLQSKELRPTEY
                     HYYQFLDRNECFAAKSVLAGVFSLMLISTMLELGLAVLTAMLWWKQSHSNIPGNVMFL
                     PHSSNNDSNMESKVLCNPSYEEQLVC"
     exon            280..414
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            415..471
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            472..669
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            670..771
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            772..1687
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1330..1335
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1352
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /note="major polyA site"
     polyA_site      1440
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
     regulatory      1519..1524
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
                     /note="hexamer: AATATA"
     polyA_site      1520
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
     polyA_site      1542
                     /gene="Ms4a6b"
                     /gene_synonym="1810027D10Rik"
ORIGIN      
        1 gttacaagtt cacaagaagg aaccaaggat cagcctgaga gaacccagag ttaaggctct
       61 tcgggttcct gagagctcgg ctggaagtga ctgggtgaca aggcacacag gctcagccgt
      121 gggagctcaa tcatgattcc acaagtagtg accagtgaga ctgtggcaat gatttcgcca
      181 aatggaatga gtcttcccca aacagacaaa ccccagcctt tccaccagtg gcaagacagc
      241 ctgaagaaac atctaaaggc tgagatcaaa gtgatggcgg caatccagat catgtgtgct
      301 gtgatggtgt tgagtctggg aatcattttg gcatctgttc cctccaatct acactttacc
      361 tcagtgtttt cagtcctgtt aaaatctggc tacccattta taggagcttt gttttttata
      421 gtctctggaa ttctgtccat cgtcacggag acaaagtcaa caaaaatttt ggtagacagc
      481 agcctgactc tgaatatcct gagtgtttca tttgctttca tgggcatcat tatcatctct
      541 gtcagcctgg ctggtttgca tcctgcctca gagcagtgct tgcagagcaa ggagcttaga
      601 ccaactgaat atcattacta ccaattcttg gacaggaacg agtgctttgc cgccaagtct
      661 gttctggctg gagtcttttc actgatgctg atcagtacta tgttggaact tggcctggct
      721 gtcctcactg ccatgctgtg gtggaaacag agtcactcta acatccctgg gaatgttatg
      781 ttcctgccac atagctcaaa taatgactcc aacatggaat caaaggtact ttgtaacccc
      841 tcatatgagg aacaattggt ttgttaagaa aaacaaaaca aaacaaaact aaataccaca
      901 aaaacaaatg gaactatacc gcagaagata tgtcttcatg ataatgcaga aattccaacc
      961 atcacagggt agcaatgctt gctacttaaa atgtagactg ttcatacagt gggtaccagt
     1021 atgagttgaa tgtgtgtatt actggcaccc tattgatttt catgaccttg gcttcagcca
     1081 aagcccagac ctacaaatgg tggcctttct tagaaaacca aacagaatgt ttcaggccat
     1141 tgtagtgggg aaaagggaca acattttctt gccccctgca attaacagca acagttaacc
     1201 attagcagtc tttgtattca gaatctctgc tatgacgtgg gtcttctatc atatcagttt
     1261 tattcactgg tgtgaataaa caagggacct gcaatgaagt ctgaagaagt ttccatgttg
     1321 ttggttcaaa ataaagtctt tttgtgattg tatattcttt ttgtatgggg ttttgtgtgg
     1381 gttttgttgt tgttgttgtt ttgcttttat gcacagatca agtcctcagt ggtacataaa
     1441 cacatgtgtt tgctattttt tttttgttct ctatcaacca aaaaaaaaaa aaaaaaaggc
     1501 atgggaaaga gaaaaaggaa tatatctgtg tctctgtgtt tatgtggtgt gtgtgtgtgt
     1561 gtgttttaaa ctaaaactga atgaacattc aaagtttagc aatgtatttt ggaggtacca
     1621 gataacatac ttatttctag aatcgccaga gcaaatgaga gacattttgt cgcttcttat
     1681 aagaggc
//
