LOCUS       NM_025658               1519 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus membrane-spanning 4-domains, subfamily A, member 4D
            (Ms4a4d), mRNA.
ACCESSION   NM_025658
VERSION     NM_025658.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   3  (bases 1 to 1519)
  AUTHORS   Liang,Y. and Tedder,T.F.
  TITLE     Identification of a CD20-, FcepsilonRIbeta-, and HTm4-related gene
            family: sixteen new MS4A family members expressed in human and
            mouse
  JOURNAL   Genomics 72 (2), 119-127 (2001)
   PUBMED   11401424
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165168.3.
            
            On Aug 22, 2018 this sequence version replaced NM_025658.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC069842.1, AK003110.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-367               AC165168.3         99285-99651         c
            368-527             AC165168.3         87807-87966         c
            528-647             AC165168.3         86060-86179         c
            648-704             AC165168.3         83557-83613         c
            705-827             AC165168.3         81519-81641         c
            828-929             AC165168.3         80152-80253         c
            930-1519            AC165168.3         77979-78568         c
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 8.44 cM"
     gene            1..1519
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     4D"
                     /db_xref="GeneID:66607"
                     /db_xref="MGI:MGI:1913857"
     exon            1..367
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            368..527
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             393..1070
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member
                     4D"
                     /protein_id="NP_079934.2"
                     /db_xref="CCDS:CCDS29602.1"
                     /db_xref="GeneID:66607"
                     /db_xref="MGI:MGI:1913857"
                     /translation="MQGLAQTTMAVVPGGAPPSENSVIKSQMWNKNKEKFLKGEPKVL
                     GAIQVMIAFINFSLGIIIILNRVSERFMSVLLLAPFWGSIMFIFSGSLSIAAGVKPTK
                     AMIISSLSVNTISSVLAVAASIIGVISVISGVFRQFRSQPAIASLDVLMTILNMLEFC
                     IAVSVSAFGCKASCCNSSEVLVVLPSNSAVTVTAPPMILQPLPPSECQGKNVPENLYR
                     NQPGEIV"
     exon            528..647
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            648..704
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            705..827
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            828..929
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            930..1519
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1500..1505
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1516
                     /gene="Ms4a4d"
                     /gene_synonym="2210417J23Rik"
ORIGIN      
        1 cagctgcgcc tggacttcca agggaacccc acagcccggg cttcatctca ggcctgggga
       61 cctccgagcc tgttctggct gtcccccgca cctctgactg tgctttccca ctttctgagc
      121 atcttctcag ggcttcccta aggcccaaca ggagcctgga cagtgtgggg taagctcaga
      181 caactccagc atctgccatc cagcatcaca catccaacat cctacatcct gcctccctga
      241 gtggccctgc cctgtgacag cgggacccaa ggactctaca actggcacta ccatcgtggt
      301 gaaaacccag ctcaagcata cccacaaata gagtcccaca tcgaaactcc accacattac
      361 tcaaggatac tgtttctgct gccctggaaa ccatgcaagg actggcacag accaccatgg
      421 cagtggttcc tggaggtgct ccaccttcag agaattctgt tataaaatca caaatgtgga
      481 acaagaacaa agagaaattc ttgaaggggg aacccaaagt cctcggggct atacaagtta
      541 tgattgcttt cataaacttc agcttaggaa taataattat attaaataga gtttctgaac
      601 gattcatgtc agtgctctta ctggccccat tttggggatc aataatgttc attttctcag
      661 gatccctgtc aattgcagca ggagtgaaac ctacaaaagc catgatcatc agcagtctaa
      721 gtgtgaacac tatcagttct gtgttggctg tggcagcaag cattattggc gtcatcagtg
      781 tgatttctgg tgtttttcgc caatttagaa gtcaaccagc catcgctagt ttggatgttt
      841 tgatgacaat tttgaatatg ctagaattct gcattgctgt gtccgtctct gcatttgggt
      901 gtaaagcttc ctgttgtaac tccagtgagg ttcttgtagt gctaccatca aattctgctg
      961 tgacagtgac agcacccccc atgatacttc aaccattgcc accatcagaa tgccaaggga
     1021 aaaatgttcc agaaaatcta tacaggaacc aaccaggaga aatagtctaa ttttgatgta
     1081 cgtgttttca tgtgtgagag tgtgtgtgtg cacatgtgta tgcatttggc tttttgtacg
     1141 aatataagac atgctctaaa taagtaagtc aagcatttat taagtcaata acactttaaa
     1201 atcttctatt cattgtatgt acaagaagaa tttaattggc aaaaaaaatt ttaatgtaaa
     1261 ctgataaaaa ccttggttta gtgaggtgaa gtctccaaag agtgaagaat ggagttcatg
     1321 ggtttttttt gggggggggt tgctaaataa ataaatttgg ctgctcacga tcatatacag
     1381 acacataaac tatgtaagac agcaggtgta ttaccttact aataatagca accaatttta
     1441 atcctacatg aatgttcatc ttaatagtat atgccttaat tgttatggtg aaaagttaca
     1501 ataaacaaaa gtgattgaa
//
