LOCUS       NM_001251849            1385 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus membrane-spanning 4-domains, subfamily A, member 18
            (Ms4a18), mRNA.
ACCESSION   NM_001251849 XM_129208 XM_908537
VERSION     NM_001251849.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1385)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1385)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   3  (bases 1 to 1385)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   4  (bases 1 to 1385)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 1385)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 1385)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 1385)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 1385)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK017199.1 and AC148991.2.
            
            On or before Oct 21, 2011 this sequence version replaced
            XM_908537.3, XM_129208.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK017199.1, SRR5189685.172941.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-547               AK017199.1         3-549
            548-567             AC148991.2         42812-42831
            568-717             AK017199.1         570-719
            718-762             AK017199.1         721-765
            763-763             AC148991.2         52367-52367
            764-1167            AK017199.1         766-1169
            1168-1168           AC148991.2         57097-57097
            1169-1385           AK017199.1         1171-1387
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 7.5 cM"
     gene            1..1385
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     18"
                     /db_xref="GeneID:76002"
                     /db_xref="MGI:MGI:1923252"
     exon            1..72
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            73..546
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..1119
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member
                     18"
                     /protein_id="NP_001238778.1"
                     /db_xref="CCDS:CCDS57137.1"
                     /db_xref="GeneID:76002"
                     /db_xref="MGI:MGI:1923252"
                     /translation="MSNQENVSAVTVPSNVQVMQPTYAVVSGSHEQPLGKTTTYPASA
                     TMLQYNPGSANFQNPQVMIQNPAGTTGLQAGPTGLQYSAGMAGVQAPPGVIQYSPEVT
                     SVQIPPGDPQNPLNTVPGPTQTSSLPQWNMSFMTFPEFNPKKFINEEVRTLGAIQILI
                     GLFHIFSAVNPQLYNTQFFVVPLLGVSGYLIWGGLSFIISGSLSVLAEKNSNSCVVNS
                     SIGMNVVSSIFSLTGIIIIIVQLSIYPSEISPLMSSMKAAAGSILPFALLEFILTCIA
                     SHFGCQAVCCAHFQNMTMFPTIFGGNTVNTTTGPGNTTIPNSTTSIPVQTTLPSNVPL
                     EQVYQDVAQK"
     exon            547..672
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            673..729
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            730..840
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            841..954
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1385
                     /gene="Ms4a18"
                     /gene_synonym="5033428B15Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgagaaatt tctaaagcag ctgcaggaac tgccagggcc taaagaagga gacagacttg
       61 ccaggactca agcagctgtg catcatgagc aatcaagaga atgtgtctgc tgtcaccgtc
      121 cccagtaatg tccaagttat gcagcctaca tatgctgtgg tctctggaag ccatgagcag
      181 cctttgggaa aaaccaccac ctacccagcc tcagcaacaa tgctccagta taacccaggg
      241 agtgcaaact tccagaaccc acaggtcatg atccagaatc ccgctggaac aacaggcctg
      301 caggctgggc ccactggact acagtattca gcaggaatgg ctggcgtgca ggctccacca
      361 ggagtaatcc agtactcacc agaagtaaca agtgtccaga tcccgcctgg agaccctcag
      421 aatcccctga acactgtccc cgggccaaca cagacctcaa gccttcccca gtggaacatg
      481 tcctttatga cttttcctga atttaatccc aagaaattca taaatgaaga ggtcagaaca
      541 ttaggggcca tccagatcct cattggccta tttcatatct tctctgcagt caaccctcaa
      601 ctctacaaca ctcaattctt cgtggttcct ttgctggggg tctcagggta cctgatctgg
      661 ggaggcctgt cttttatcat ctctggatcc ttgtcagtct tggctgaaaa gaattccaac
      721 agttgtgtgg tgaatagcag cattggcatg aatgttgtca gttccatctt ctccttgact
      781 ggtatcatca ttatcatcgt acagttgtct atttacccca gtgagattag tcctctgatg
      841 agttctatga aggcagctgc tggtagtatc ctccccttcg ccctccttga attcatcctc
      901 acctgcatag cctcacattt tggatgccag gctgtctgct gcgcccattt tcagaacatg
      961 acaatgttcc caaccatatt tggtggcaac acagtcaaca caaccactgg acctggcaac
     1021 accaccatcc caaacagtac caccagcatc ccagttcaga ccaccctccc cagtaatgtt
     1081 ccccttgaac aagtatacca agatgtagcc cagaaatagt tgacagaata gctgacagaa
     1141 tgcccacttc aatgacattt caaaggaagc gctgctacaa caatatcttt gtttcacctt
     1201 gaaacacctg tgactttgac tttggcatta cctctgggcc aagatgaaca tccatttttt
     1261 ttccacctct ttactcttaa gcttcccttt ggtttgttat taattgtgct tttttttaat
     1321 tcataatcct ttttcccttt gactctagct atcttttaac tttaacaaac tgcatacaat
     1381 gctgc
//
