LOCUS       NM_001290810            1242 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus mRNA turnover 4, ribosome maturation factor (Mrto4),
            transcript variant 1, mRNA.
ACCESSION   NM_001290810 XM_006539161
VERSION     NM_001290810.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1242)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY246960.1, BY083288.1, AK011387.1 and BC096556.1.
            
            On Mar 20, 2014 this sequence version replaced XM_006539161.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC096556.1, SRR13948564.1861646.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-25                BY246960.1         1-25
            26-279              BY083288.1         26-279
            280-1205            AK011387.1         2-927
            1206-1242           BC096556.1         949-985
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 70.65 cM"
     gene            1..1242
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /note="mRNA turnover 4, ribosome maturation factor"
                     /db_xref="GeneID:69902"
                     /db_xref="MGI:MGI:1917152"
     exon            1..308
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     CDS             281..1000
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /note="isoform 1 is encoded by transcript variant 1;
                     muscle protein684; mRNA turnover protein 4 homolog;
                     ribosome assembly factor Mrto4; mRNA turnover 4, homolog;
                     MRT4, mRNA turnover 4, homolog"
                     /codon_start=1
                     /product="mRNA turnover protein 4 homolog isoform 1"
                     /protein_id="NP_001277739.1"
                     /db_xref="CCDS:CCDS71505.1"
                     /db_xref="GeneID:69902"
                     /db_xref="MGI:MGI:1917152"
                     /translation="MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFS
                     VANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGL
                     LFTNRTKEEVNEWFTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPT
                     ALKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQM
                     DDDLPESAPESEGESEEEDDS"
     exon            309..367
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     exon            368..471
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     exon            472..553
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     exon            554..621
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     exon            622..773
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     exon            774..850
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     exon            851..1216
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1173..1178
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /note="hexamer: AATAAA"
     polyA_site      1214
                     /gene="Mrto4"
                     /gene_synonym="2610012O22Rik; Mg684; Mrt4"
                     /note="major polyA site"
ORIGIN      
        1 gggcctcaag cccctccctc cgcagagcca tagagaggaa ccggttcgcg agggacttgg
       61 tggagtgctc gggactcgga agccgccggg actggaggga cccgggacct gggcagagaa
      121 gtggccttca ggacactggg cggagcgcag gcggggaaga gagggctcgc cacagttcag
      181 gcacacgcga ggggcagccc cgagcgccgt cccataagcc cccgcggcag ccgggtccta
      241 accggccgcc cagtcttccg ccgcacgtgc ctttgccgcg atgcccaaat ccaagcgaga
      301 caagaaagtt tctttaacaa aaactgccaa gaaaggcttg gaactgaagc agaacctgat
      361 agaagagctt cggaaatgtg tggacaccta caagtacctt ttcatcttct ctgtggccaa
      421 catgaggaac agcaagctga aagacatccg gaacgcctgg aaacacagcc ggatgttctt
      481 tggcaaaaac aaggtgatga tggtggcctt gggtcgaagc ccatctgatg aatacaaaga
      541 caacctacat caggtcagca agaagttgag aggtgaagtt gggctgctgt ttaccaaccg
      601 cacgaaggag gaggtgaatg agtggttcac caagtataca gaaatggatt ttgctcgagc
      661 ggggaacaaa gcaactctaa ctgtgagcct ggatccaggg cccctgaagc aattccctca
      721 ctccatggag ccacagctga ggcagctggg gctgcccact gccctcaaga aaggtgtggt
      781 gaccctgctg tctgactatg aagtatgcaa agagggtgat gtgctgaccc cagagcaggc
      841 ccgtatcctg aagctgtttg ggtatgagat ggctgaattc aaagtgatca tcaaatacat
      901 gtgggacgcc cagtcgggac gattccagca gatggacgat gacctgcctg agagcgcgcc
      961 tgagtctgag ggagagtctg aggaggagga tgacagctga ctctgagagc caggactatg
     1021 gccttccagc gagttcttca tctttgctgg acaccccacc ccacctcacc ctgcccccgg
     1081 actgctgtca ccactctaga gggaacagct atttattttg ctatggacaa agacaaggga
     1141 gggtgctagg gaatgatttt gtttctataa agaataaaat tgtgtccgcg gggtgttccc
     1201 gggagacagc aggagaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
