LOCUS       NM_026826                526 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein S18C (Mrps18c), mRNA.
ACCESSION   NM_026826 XM_194230
VERSION     NM_026826.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   3  (bases 1 to 526)
  AUTHORS   Cheong,A., Archambault,D., Degani,R., Iverson,E., Tremblay,K.D. and
            Mager,J.
  TITLE     Nuclear-encoded mitochondrial ribosomal proteins are required to
            initiate gastrulation
  JOURNAL   Development 147 (10) (2020)
   PUBMED   32376682
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 526)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   5  (bases 1 to 526)
  AUTHORS   Amunts,A., Brown,A., Toots,J., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Ribosome. The structure of the human mitochondrial ribosome
  JOURNAL   Science 348 (6230), 95-98 (2015)
   PUBMED   25838379
REFERENCE   6  (bases 1 to 526)
  AUTHORS   Romand,R., Ripp,R., Poidevin,L., Boeglin,M., Geffers,L., Dolle,P.
            and Poch,O.
  TITLE     Integrated annotation and analysis of in situ hybridization images
            using the ImAnno system: application to the ear and sensory organs
            of the fetal mouse
  JOURNAL   PLoS One 10 (2), e0118024 (2015)
   PUBMED   25706271
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 526)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   8  (bases 1 to 526)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC028442.1.
            
            On Jan 24, 2005 this sequence version replaced XM_194230.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC028442.1, CK791920.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 48.52 cM"
     gene            1..526
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /note="mitochondrial ribosomal protein S18C"
                     /db_xref="GeneID:68735"
                     /db_xref="MGI:MGI:1915985"
     exon            1..102
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..443
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /note="28S ribosomal protein S18c, mitochondrial; S18mt-c;
                     mrps18-c; MRP-S18-1; MRP-S18-c; 28S ribosomal protein
                     S18-1, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein bS18m"
                     /protein_id="NP_081102.1"
                     /db_xref="CCDS:CCDS19468.1"
                     /db_xref="GeneID:68735"
                     /db_xref="MGI:MGI:1915985"
                     /translation="MAALVALCSGIGRKNLTTAAGCFTDRGTQAVSVIWRRCFSQFEQ
                     VTSNEDLPVPMENPYKEPLKKCVLCEKRVDYKNVQLLSQFISPFTGCIYGRHITGLCG
                     KKQREITKAIKRAQKMGFMPVTYKDPAYLKDPRVCNIRYRE"
     exon            103..164
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            165..248
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            249..306
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            307..366
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            367..502
                     /gene="Mrps18c"
                     /gene_synonym="1110037D14Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggagaac catggccgct ctggttgctc tgtgcagtgg tatagggagg aagaatttga
       61 caaccgcggc tggctgcttc acggatcgcg gaactcaagc agtttctgtg atttggagac
      121 gatgtttttc acagtttgaa caggtaacca gcaatgagga cctgccagtc ccaatggaga
      181 acccctacaa ggagcctctt aagaagtgtg tcttgtgtga gaaacgtgta gattacaaga
      241 atgtgcagct tttgtcccag tttatttctc catttaccgg atgcatttat ggaaggcaca
      301 taacaggtct ttgtggaaag aaacagaggg aaataactaa agccattaag agagctcaga
      361 aaatggggtt tatgccagtt acatacaagg atcctgcata tctcaaagac cctagagttt
      421 gtaacatcag ataccgagaa taaattttgt atttgtgaag ttcctgccaa taaacctcta
      481 agtggttgtc agcagactcc aaaaaaaaaa aaaaaaaaaa aaaaaa
//
