LOCUS       NM_026768                864 bp    mRNA    linear   ROD 31-MAY-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein S18A (Mrps18a), mRNA.
ACCESSION   NM_026768
VERSION     NM_026768.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Wan,Y., Yang,S., Li,T., Cai,Y., Wu,X., Zhang,M., Muhammad,T.,
            Huang,T., Lv,Y., Chan,W.Y., Lu,G., Li,J., Sha,Q.Q., Chen,Z.J. and
            Liu,H.
  TITLE     LSM14B is essential for oocyte meiotic maturation by regulating
            maternal mRNA storage and clearance
  JOURNAL   Nucleic Acids Res 51 (21), 11652-11667 (2023)
   PUBMED   37889087
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   3  (bases 1 to 864)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   4  (bases 1 to 864)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   5  (bases 1 to 864)
  AUTHORS   Diehl,F., Brown,M.A., van Amerongen,M.J., Novoyatleva,T.,
            Wietelmann,A., Harriss,J., Ferrazzi,F., Bottger,T., Harvey,R.P.,
            Tucker,P.W. and Engel,F.B.
  TITLE     Cardiac deletion of Smyd2 is dispensable for mouse heart
            development
  JOURNAL   PLoS One 5 (3), e9748 (2010)
   PUBMED   20305823
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 864)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   7  (bases 1 to 864)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   8  (bases 1 to 864)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Proteomic analysis of the mammalian mitochondrial ribosome.
            Identification of protein components in the 28 S small subunit
  JOURNAL   J Biol Chem 276 (35), 33181-33195 (2001)
   PUBMED   11402041
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC110562.17.
            
            On Apr 30, 2007 this sequence version replaced NM_026768.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003444.1, AK172171.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               AC110562.17        121528-121653
            127-158             AC110562.17        128464-128495
            159-266             AC110562.17        133248-133355
            267-390             AC110562.17        135814-135937
            391-460             AC110562.17        136167-136236
            461-864             AC110562.17        139029-139432
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.86 cM"
     gene            1..864
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /note="mitochondrial ribosomal protein S18A"
                     /db_xref="GeneID:68565"
                     /db_xref="MGI:MGI:1915815"
     exon            1..126
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..605
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /note="28S ribosomal protein S18a, mitochondrial; S18mt-a;
                     MRP-S18-3; MRP-S18-a; 28S ribosomal protein S18-3,
                     mitochondrial; large ribosomal subunit protein mL66"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL66 precursor"
                     /protein_id="NP_081044.1"
                     /db_xref="CCDS:CCDS28819.1"
                     /db_xref="GeneID:68565"
                     /db_xref="MGI:MGI:1915815"
                     /translation="MAALRALVSGCGRQLQAFLAGPAATGWLWLPARGLREVVKIQEG
                     KTTVIEGRITETPKATPDPPNPSGQCPICRWNLKHKYTYEDVLLLSQFIRPYGGMLPR
                     RVTGLCREEHRKIEECVKMAHRAGLLPNHRPQLPEGCLPKDKPKLNRYLTRWAPKSVK
                     PIYKKGHRWNKVGMAVGSPLLKDNVCYSRRPLKMMH"
     exon            127..158
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            159..266
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            267..390
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            391..460
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            461..864
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      843..848
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /note="hexamer: AATAAA"
     polyA_site      864
                     /gene="Mrps18a"
                     /gene_synonym="1110004O20Rik"
                     /note="major polyA site"
ORIGIN      
        1 aggtgcgttc caagatggcg gccctcaggg ctctggtgtc aggctgcggg cggcagctcc
       61 aagcgttcct ggcaggcccc gctgccactg gctggttatg gcttccagct cgcgggttga
      121 gagaagtggt gaagatccaa gaagggaaga cgactgtaat tgaaggccga atcacagaaa
      181 ctcccaaggc gactccagat ccccctaacc cctcaggcca gtgccccatc tgccgctgga
      241 acctgaagca caaatatacc tatgaggatg tgttgttgct cagtcagttc atccggcctt
      301 atggaggcat gctgccccgg cgggtcacag gcttgtgccg ggaagaacac cgaaaaatcg
      361 aggagtgcgt gaagatggct catcgagcag gtctgttacc aaatcacaga ccacagcttc
      421 cagaaggatg cttaccaaag gataaaccca agctcaaccg ctatctgact cgctgggctc
      481 ccaagtccgt caagcccatc tataaaaaag gccaccgttg gaacaaggtg ggtatggccg
      541 tggggtcacc actcctgaaa gacaatgtct gctactccag aaggcctctg aagatgatgc
      601 attagtggga gcaggacttc tgaagagctg actagaaccg tctagaagat gcacttgctc
      661 ctcccaccag aaccattatc ctccacaaca gcacagagaa ctaacttctg tgccttggat
      721 ctgcccagct gcaatgttgg aagccaaggg cagccaggag ctggatctcc tggccactgt
      781 ggtcttctgc ctggctgggg ctgaggttgg agcagggacg ggagccttac ccaaggcaat
      841 gtaataaagc aggctcttgg cttc
//
