LOCUS       NM_001356959            1052 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein S17 (Mrps17),
            transcript variant 7, mRNA.
ACCESSION   NM_001356959 XM_006504323
VERSION     NM_001356959.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   3  (bases 1 to 1052)
  AUTHORS   Amunts,A., Brown,A., Toots,J., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Ribosome. The structure of the human mitochondrial ribosome
  JOURNAL   Science 348 (6230), 95-98 (2015)
   PUBMED   25838379
REFERENCE   4  (bases 1 to 1052)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1052)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   6  (bases 1 to 1052)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Proteomic analysis of the mammalian mitochondrial ribosome.
            Identification of protein components in the 28 S small subunit
  JOURNAL   J Biol Chem 276 (35), 33181-33195 (2001)
   PUBMED   11402041
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC120413.20.
            
            On Oct 13, 2017 this sequence version replaced XM_006504323.2.
            
            Transcript Variant: This variant (7) differs in the 5' UTR compared
            to variant 1. Variants 1-7 all encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003008.1, DV061554.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-53                AC120413.20        69277-69329         c
            54-133              AC120413.20        69063-69142         c
            134-273             AC120413.20        67960-68099         c
            274-1052            AC120413.20        66132-66910         c
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 68.25 cM"
     gene            1..1052
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /note="mitochondrial ribosomal protein S17"
                     /db_xref="GeneID:66258"
                     /db_xref="MGI:MGI:1913508"
     exon            1..53
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /inference="alignment:Splign:2.1.0"
     exon            54..133
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /inference="alignment:Splign:2.1.0"
     exon            134..273
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..513
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /note="28S ribosomal protein S17, mitochondrial; S17mt;
                     MRP-S17; small ribosomal subunit protein uS17m"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS17m precursor"
                     /protein_id="NP_001343888.1"
                     /db_xref="CCDS:CCDS19697.1"
                     /db_xref="GeneID:66258"
                     /db_xref="MGI:MGI:1913508"
                     /translation="MSIVRSSVHAKWVVGKVIGTAMIKTAKVRATRLVLDPYLLKYFN
                     KRKTYFAHDALQQCSVGDIVLLRALPVPRSKHVKHELAEIIFKVGRVIDPVTGKPCAG
                     TAYLESPLSEPREELKVS"
     exon            274..1052
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /inference="alignment:Splign:2.1.0"
     regulatory      592..597
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /note="hexamer: ATTAAA"
     polyA_site      615
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
     regulatory      801..806
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /note="hexamer: AAGAAA"
     regulatory      822..827
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /note="hexamer: CATAAA"
     polyA_site      839
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
                     /note="major polyA site"
     polyA_site      864
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
     polyA_site      1052
                     /gene="Mrps17"
                     /gene_synonym="1810006P02Rik; Mprs17"
ORIGIN      
        1 gagcgtcatc acgctgcgcc catgctccgc cggccttgtg gtggactccg gaggaacctg
       61 gctcaccggc cgaggtcttg ccgtgagccc ttgtgtgtac agtagcaggc tgtaactgag
      121 acagacagct gcagtgctta cagacacata atgtcaatag tccgttcatc cgtccacgcc
      181 aaatgggttg tggggaaggt gattggtaca gccatgataa aaacggctaa agtaagagcg
      241 accagacttg ttttggatcc ctacttactg aagtacttta ataaacggaa aacctacttt
      301 gctcacgatg cccttcagca gtgcagcgtc ggggacatcg tgctcctcag agctttgccc
      361 gtcccacgat cgaagcatgt gaagcacgaa ctggctgaga tcatcttcaa agtcggccga
      421 gttatcgacc ccgtcaccgg aaagccctgt gcaggaactg cctacctaga gagccccctc
      481 agcgaacctc gggaggagct caaggtctcc tgaacccagg aaaggaggag ccagaggcat
      541 ttctgtctgt gtgttttgct caatggtttt cattactgtt tctcctgtga cattaaaagt
      601 agtcagcaaa gtaaagagct tagtgctcca tacagggttg catccttttt cagattctct
      661 gaactgaagg tactgattac tctgtatgcc taaggatgcg gcatcatttt gtgagctctc
      721 tgtcctggat cgtatgtatt gtctcattgt tcattgcctc ccccaaagaa atcttggact
      781 gagcaccttt gttttgaaag aagaaaacct tttgataatg acataaaagg ctaaacttag
      841 ttttggcagc ttgatttttc aaaatttatt gtgtgtgtgt ccacaatgcc tgtgtgggca
      901 cacctgtgcc accacacaca cactgtggca gccagaggac agctttgtgg agtccggtct
      961 cctttcactc ttacgtggtt cccagtaaca cacctgtacc cactgagcca tcctattgac
     1021 actgagtttt aatgattcat attcaaagta aa
//
