LOCUS       NM_025440                654 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus mitochondrial ribosomal protein S16 (Mrps16),
            transcript variant 1, mRNA.
ACCESSION   NM_025440
VERSION     NM_025440.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Cheong,A., Lingutla,R. and Mager,J.
  TITLE     Expression analysis of mammalian mitochondrial ribosomal protein
            genes
  JOURNAL   Gene Expr Patterns 38, 119147 (2020)
   PUBMED   32987154
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Greber,B.J. and Ban,N.
  TITLE     Structure and Function of the Mitochondrial Ribosome
  JOURNAL   Annu Rev Biochem 85, 103-132 (2016)
   PUBMED   27023846
  REMARK    Review article
REFERENCE   3  (bases 1 to 654)
  AUTHORS   Gomez-Del Arco,P., Perdiguero,E., Yunes-Leites,P.S., Acin-Perez,R.,
            Zeini,M., Garcia-Gomez,A., Sreenivasan,K., Jimenez-Alcazar,M.,
            Segales,J., Lopez-Maderuelo,D., Ornes,B., Jimenez-Borreguero,L.J.,
            D'Amato,G., Enshell-Seijffers,D., Morgan,B., Georgopoulos,K.,
            Islam,A.B., Braun,T., de la Pompa,J.L., Kim,J., Enriquez,J.A.,
            Ballestar,E., Munoz-Canoves,P. and Redondo,J.M.
  TITLE     The Chromatin Remodeling Complex Chd4/NuRD Controls Striated Muscle
            Identity and Metabolic Homeostasis
  JOURNAL   Cell Metab 23 (5), 881-892 (2016)
   PUBMED   27166947
REFERENCE   4  (bases 1 to 654)
  AUTHORS   Amunts,A., Brown,A., Toots,J., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Ribosome. The structure of the human mitochondrial ribosome
  JOURNAL   Science 348 (6230), 95-98 (2015)
   PUBMED   25838379
REFERENCE   5  (bases 1 to 654)
  AUTHORS   Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T.,
            Wada,A. and Watanabe,K.
  TITLE     Proteomic analysis of the mammalian mitochondrial ribosome.
            Identification of protein components in the 28 S small subunit
  JOURNAL   J Biol Chem 276 (35), 33181-33195 (2001)
   PUBMED   11402041
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY108330.1, AK005206.1 and AC121801.2.
            
            On Apr 17, 2018 this sequence version replaced NM_025440.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK023170.1, DV654361.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-79                BY108330.1         3-81
            80-645              AK005206.1         2-567
            646-654             AC121801.2         98953-98961
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 11.53 cM"
     gene            1..654
                     /gene="Mrps16"
                     /gene_synonym="1500011E11Rik; Mprs16; S16mt"
                     /note="mitochondrial ribosomal protein S16"
                     /db_xref="GeneID:66242"
                     /db_xref="MGI:MGI:1913492"
     exon            1..154
                     /gene="Mrps16"
                     /gene_synonym="1500011E11Rik; Mprs16; S16mt"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..549
                     /gene="Mrps16"
                     /gene_synonym="1500011E11Rik; Mprs16; S16mt"
                     /note="28S ribosomal protein S16, mitochondrial; small
                     ribosomal subunit protein bS16m"
                     /codon_start=1
                     /product="small ribosomal subunit protein bS16m precursor"
                     /protein_id="NP_079716.1"
                     /db_xref="CCDS:CCDS36817.1"
                     /db_xref="GeneID:66242"
                     /db_xref="MGI:MGI:1913492"
                     /translation="MVQLTTIFCKAYHGGHLTIRLALGGCTNRPFYRIVAAHNKCPRD
                     GRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLSGFFPLHPM
                     MITNAERLRRRRAREVLLASQKAESEAKETEAS"
     exon            155..415
                     /gene="Mrps16"
                     /gene_synonym="1500011E11Rik; Mprs16; S16mt"
                     /inference="alignment:Splign:2.1.0"
     exon            416..654
                     /gene="Mrps16"
                     /gene_synonym="1500011E11Rik; Mprs16; S16mt"
                     /inference="alignment:Splign:2.1.0"
     regulatory      631..636
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Mrps16"
                     /gene_synonym="1500011E11Rik; Mprs16; S16mt"
                     /note="hexamer: AATAAA"
     polyA_site      653
                     /gene="Mrps16"
                     /gene_synonym="1500011E11Rik; Mprs16; S16mt"
                     /note="major polyA site"
ORIGIN      
        1 gcagagggct ttccggctct ggagtggtgc ggacgtcgcg tcgtgtgccc gccggccgct
       61 tgggggcgct cttccgggct tcaggctctg tgccgcgggg ctgtgcagcg ggacagctgg
      121 agagccgctc gcccaggcac catggtccag ctcacaacca ttttctgcaa agcctaccac
      181 ggaggccacc taaccatacg ccttgctttg ggtggctgca ccaaccggcc tttttaccgc
      241 attgtggctg ctcacaacaa gtgccccagg gatggccgat ttgtggagca gttgggctcc
      301 tatgatccac tacccaacag tcacggagaa aaactagttg ccctcaacct ggaccgtatc
      361 cggcattgga ttggctgtgg ggctcacctc tctaagccta tggagaaact tctaggtctg
      421 tctggctttt tcccccttca tccaatgatg atcaccaatg ctgagagact acggaggagg
      481 agagcacgag aggtcctctt agcgtctcag aaagcagagt cagaggccaa agagacagaa
      541 gcaagctgac ttcagtgaac actgccgtgg ccgcaaagtc aagggcctgt gaaacttgtg
      601 cataaagttt tgtgttgggt tttaaggatc aataaatgga gttttctaag tcac
//
